Science Spotlight

Banded black brant feeding on eelgrass


Volunteer John Roser in the field at Morro Bay


Flock of black brant in flight above Morro Bay


Black brant in Morro Bay

John Roser began hearing the stories shortly after he moved to Los Osos, San Luis Obispo County, on the shores of Morro Bay in the mid-1990s.

Longtime birders, waterfowl hunters, biologists and other coastal residents were all saying the same thing: It seemed fewer black brant were showing up on the bay each winter.

The coastal sea goose is a cultural icon of the area, the signature species of the Morro Bay Winter Bird Festival and a temporary visitor welcomed by locals as the geese arrive each fall from their summer breeding grounds in the Arctic. When the geese are present in big numbers, you can hear their cacophony almost anywhere on the bay from November through April or until the warm environs of Baja California lure the birds farther south on their migration.

Roser, who holds a degree in biology from Cal Poly San Luis Obispo and spent 25 years as an environmental educator, set out to see if the old-timers’ stories were true. For the past 21 years, he has provided CDFW and brant biologists throughout the Pacific Flyway with their most credible and reliable source of data on wintering brant in Morro Bay.<

“I’m retired, and I wanted to take on a volunteer project that would make a difference in this community,” Roser said of his motivation. “I wanted to create a Morro Bay specific data set significant enough that it would be valuable in brant studies and research across the Pacific Flyway.”

Roser’s initial efforts in 1997 focused on reading and reporting bands on individual birds with the help of a high-powered telescope. He has recorded more than 4,000 bands, including one affixed by a Russian ornithologist to a bird in Siberia some 5,000 miles away from Morro Bay where Roser spotted it. In addition to counting individual birds, Roser developed a formula – in consultation with brant biologists – to calculate the number of “brant use days” in Morro Bay each winter.

Roser’s retirement project has led him on a brant-like odyssey.

He banded brant one summer in Alaska, worked in Humboldt Bay with leading brant researcher Jeff Black and his Humboldt State University graduate students, and traveled to Baja California to help biologists read bands on birds at the extreme end of their southern range. Much of Roser’s winter observations take place at CDFW’s Morro Bay Wildlife Area.

“John is our go-to guy on the ground in Morro Bay for sure,” said Melanie Weaver, the head of CDFW’s Waterfowl Program. “We only have two employees in our program, myself included, so we depend on regional staff and volunteers like John to help compile survey data. John is part of the local community, he cares, and he is close to the resource.”

The data Roser supplies are incorporated into CDFW’s Mid-winter Waterfowl Survey, which is used to set hunting regulations for the following waterfowl season.

What attracts brant to Morro Bay is the same thing that prompts the birds to stop at other coastal bays along their southward migration: eelgrass. The underwater seagrass grows in shallow marine environments and is the birds’ primary food source.

Roser’s initial research in 1997 confirmed the reports he was hearing: The wintering brant population in Morro Bay had declined significantly and corresponded with a crash in eelgrass acreage in the bay.

While CDFW surveys from the 1930s through 1960s documented Morro Bay’s wintering brant population as high as 11,800 birds, Roser’s first survey in 1997 recorded a population high of fewer than 700 birds.

The eelgrass crash in the mid-1990s was temporary and well-understood, caused by an influx of sediment from a fire-ravaged landscape, a deluge of freshwater from a rainy year and warming El Nino ocean conditions. As environmental conditions normalized in subsequent years, the eelgrass rebounded, and the brant returned. Roser counted a population high of 4,600 birds in Morro Bay in 2001.

The story since then, as told in Roser’s annual reports to CDFW, is of another dramatic crash in eelgrass acreage in Morro Bay and a corresponding drop in the numbers of brant wintering there. Unlike the eelgrass crash of the mid-1990s, the latest decline has been more persistent and perplexing.

Biologists measure Morro Bay’s eelgrass acreage each year. Eelgrass spanned 344 acres as recently as 2007 but had dwindled to just 14 acres by 2017. Not surprisingly, Roser’s 2016-17 brant survey recorded a population high of just 319 birds and a low of 43. Roser’s brant-use-day metric has fallen by 90 percent since the nearly 500,000 brant use days he recorded in 2001. In the past five years, brant use days have measured around 50,000 a year. Money from the purchase of the California duck stamp-validation, required to hunt waterfowl in California, is funding research into the eelgrass decline along with restoration efforts.

In addition to fewer numbers of brant frequenting Morro Bay, Roser has noticed behavioral changes in the birds that still show up. Increasingly, the brant are foraging on secondary food sources that include salt marsh vegetation and green algae species such as sea lettuce with eelgrass in short supply.

Roser takes some solace that the overall Pacific Flyway brant population is holding steady if not increasing, estimated between 130,000 to 165,000 birds. Roser says waterfowl biologists are seeing flyway-wide changes in brant behavior that they suspect may be linked to climate change.

Fewer brant are migrating to Mexico for the winter. More are remaining in Alaska and their northern range throughout the year as warming Arctic conditions require fewer calorie demands and less ice exposes more eelgrass. Ten years ago, less than 10 percent of the population wintered in Alaska. By 2017, almost 40 percent of the Pacific Flyway population spent the winter there.

“This bird is tied to Morro Bay, our culture and our identity,” Roser said. “A robust wintering brant population needs abundant eelgrass beds. Eelgrass needs a healthy bay and watershed. Our actions as stewards of Morro Bay really do reverberate across the globe.”

CDFW photos: courtesy of John Roser
Top photo: Pair of black brant on Morro Bay

It does not take a leap of faith to believe that CDFW scientists have gained the upper hand in bolstering the population of yellow-legged frogs in the High Sierra.

Over the past three decades, Sierra Nevada yellow-legged frogs have become imperiled in California due to the two-pronged impact of introduced (non-native) trout and chytridiomycosis, a disease that is affecting amphibians worldwide.

Past introduction of non-native fish, including rainbow trout and golden trout, to benefit sport fishing in the High Sierra took a heavy toll on the species. High-elevation lakes where these frogs once flourished were largely fishless until fish stocking came into vogue. As the years passed, scientists determined that these introduced fish were depopulating the frogs by competing for food sources (primarily insects) and by predation (trout ate both adult frogs and their tadpoles). Chytridiomycosis, which affects many frog species, also impaired the ability of the Sierra Nevada yellow-legged frog’s skin to exchange vital nutrients, which often leads to death.

As a result, Sierra Nevada yellow-legged frogs are believed to have vanished from approximately 92 percent of their historical habitat, and halting and reversing that decline has become an important goal of CDFW, as well as other state and federal entities.

“This is an animal that only lives in the Sierra Nevada,” said Sarah Mussulman, a CDFW senior environmental scientist. “It is one of our unique California species that lives in high-elevation areas, and as an amphibian it serves as an important link between the terrestrial and aquatic ecosystems. This link is especially critical in the low nutrient, granitic basins of the High Sierra, where frogs and tadpoles consume insects and algae and are themselves consumed by a variety of snakes, birds and mammals.”

CDFW recently completed two projects as part of its ongoing efforts to reverse the population decline of Sierra Nevada yellow-legged frogs.

The efforts took place at two sites: Highland Lake and Clyde Lake, located approximately seven miles apart on the Rubicon River in the Desolation Wilderness area of El Dorado County. The projects were completed with federal grant funds earmarked for the recovery of endangered and threatened species (the species is listed as threatened by the State of California and as endangered by the U.S. Fish and Wildlife Service).

Highland Lake, along with its outlet, an unnamed stream, and two small adjacent ponds, supported a small population of rainbow trout when the project began in 2012. Trout abundance had declined in the absence of stocking in recent years but sufficient natural reproduction occurred in the inlet to Highland Lake to sustain the population. CDFW began using gill nets to remove rainbow trout -- the descendants of fish planted in the lake by CDFW from 1935 to 2000 -- in 2012, in partnership with Eldorado National Forest personnel.

During a frog-monitoring survey at Highland Lake in 2016, approximately 800 adult frogs were observed, as compared to a 2003 survey in which only a few tadpoles were observed. Because the frogs have consistently survived in this area despite the presence of chytridiomycosis, scientists believe they have a good chance at persisting in the area for a long time.

“Highland really had a population explosion over the past five years and can be counted as one of the most successful projects of this type ever undertaken,” Mussulman said.

The project at Clyde Lake was smaller and had somewhat different factors.

Golden trout, which frequently have the same negative impacts on Sierra Nevada yellow-legged frogs as rainbow trout, including predation and competition for food sources, were planted by CDFW at Clyde Lake from 1932 through 2000.

Once stocking was halted, the golden trout proved less resilient then the rainbow trout at Highland Lake, due to habitat factors.

“Clyde Lake sits in a north-facing granite bowl bordered by 1,000-foot cliffs, and no flowing streams enter the lake,” explained Mussulman. “There was no spawning habitat, which is likely why golden trout did not persist there after stocking was halted.”

The stream flowing out of Clyde Lake and four nearby ponds did support a small population of golden trout after plants were halted. The fish in the stream and ponds, which are self-sustaining populations, are precluded from moving from the stream into Clyde Lake by a fabricated dam. In 2013, frogs and a few tadpoles were observed in the stream alongside fish, and CDFW began removing the fish from the stream with gill nets to provide additional habitat for the frogs.

Nine years of monitoring data collected by CDFW scientists indicate that the area’s Sierra Nevada yellow-legged frog population, while small, is slowly increasing. Surveyors observed more than 120 frogs in 2016, compared to a low of six observed in 2005. Moreover, in 2016, for the first time, dozens of tadpoles were observed in the newly fish-free lower reaches of the stream.

“It is great to see these populations recovering,” Mussulman said. “It is a great privilege doing this work that helps keep these frogs on the landscape.”

CDFW photos: Highland Lake in the Desolation Wilderness, and a Sierra Nevada yellow-legged frog

The latest issue of California Fish and Game, 103-3, makes a significant contribution to the body of research related to longfin smelt in California. A paper titled, “Historic and contemporary distribution of Longfin Smelt (Spirinchus thaleichthys) along the California coast (PDF)” analyzes and presents observation data for this species from a variety of published and unpublished sources dating from 1889 to 2016. This anadromous fish, which is listed as threatened under the California Endangered Species Act, has been documented in a diverse range of habitats, including coastal lagoons, bays, estuaries, sloughs, tidal freshwater streams and nearshore habitats. In addition to providing a comprehensive look at the existing information available for longfin smelt along the California coast, this paper identifies additional information needed to improve management and enhance recovery of the species within the state.

In “Distribution and derivation of dabbling duck harvests in the Pacific Flyway (PDF),” the authors look at abundance, banding and harvest data from throughout the Pacific Flyway and other important source areas in the Central Flyway to estimate the distribution and derivation of Pacific Flyway dabbling duck harvests during 1966−2013. The Pacific Flyway has long been considered an important wintering area for dabbling ducks. Better knowledge of the origins of these birds could assist in both harvest and habitat management.

The authors of “Distribution of Amargosa River pupfish (Cyprinodon nevadensis amargosae) in Death Valley National Park, CA (PDF)” endured harsh environmental conditions to document the occurrence of Amargosa River pupfish along the lower Amargosa River drainage where the species has not been previously documented. The downstream-most location of Amargosa pupfish captured in this study extends the previously recorded geographic range approximately 49 river km. The findings not only determine the distribution of Amargosa River pupfish within Death Valley National Park, but will help identify suitable locations at which to establish long-term monitoring sites.

California Fish and Game has published high-quality, peer-reviewed science for the past 103 years, making important contributions to the understanding and conservation of California’s wildlife.

Cover photo courtesy of Gerald and Buff Corsi © California Academy of Sciences.

For residents of Humboldt and Del Norte counties, the majestic Roosevelt elk is a common sight. Although Roosevelt numbers were dwindling in California by the 1920s, conservative management strategies and limited hunting opportunities have helped them to rebound. Today, researchers have identified more than 20 distinct groups of elk in these two counties, many of which consist of well over 50 animals.

This conservation success story doesn’t come without a downside, though. Elk require large amounts of food to survive, and they tend to graze where food is most plentiful – often in agricultural areas and residential neighborhoods, where they cause damage to crops, landscaping, fencing and other private property.

Partly in response to rising concerns about property damage caused by the Humboldt and Del Norte herds, CDFW scientists are working on a wide-ranging, long-term study of Roosevelt elk population size and growth, herd movements, habitat use, disease and causes of mortality. The project, which is a collaborative effort with researchers from Humboldt State University, will collect critical baseline information about the animals that will help CDFW develop more robust and efficient methods for monitoring the herds, set future hunt quotas, inform local agencies about elk management and manage depredation issues. CDFW initiated this project in 2016 and expects to continue data collection efforts through 2018.

Tracking and studying one of the largest mammals in California is a much more complex undertaking than one might think. Roosevelt elk herds are wide-ranging and tend to graze in areas that are not easily accessible. Traditionally, CDFW relied on aerial surveys to monitor population trends of big game species such as elk, but such surveys are only feasible in a small portion of northwestern California because visibility is limited by steep terrain and dense vegetation. Ground surveys have similar constraints and are further limited by the small amount of occupied habitat that can be easily accessed from roads.

Given these constraints, CDFW scientists are employing multiple survey methodologies for the current study. Different techniques will be used in different habitat types. For example, in hard-to-reach areas, trail camera footage will be compared to visual surveys and used to collect herd composition data and estimate population size. Estimates will also be derived from analyzing the DNA contained in elk droppings.

CDFW also monitors the movement of the Roosevelt elk via electronic collars. There are currently 20 collared elk in coastal Del Norte and northern Humboldt counties and researchers hope to extend this project into central Humboldt County this winter, with plans to collar as many as 30 additional elk. Captured animals are also marked with ear tags, which allow for individual identification.

These survey efforts, and similar efforts elsewhere in the North Coast Roosevelt Elk Management Unit (EMU), are outlined in California’s Draft Elk Conservation and Management Plan, which is available for public review and comment through Monday, January 29. The plan provides guidance and direction to help set priorities for elk management efforts statewide.

CDFW photo: Environmental Scientist Carrington Hilson monitors a Roosevelt elk during a survey of the population.

The tilapia skin is visible on the bottom of the bear's paw.


Veterinarians perform an ultrasound to check on the progress of the second bear's pregnancy.


Acupuncture needles assist with pain management.


After placing the second bear, the team moved the first bear to another location where another man-made den awaited.


CDFW staff work together to build a makeshift den for a soft release in Los Padres National Forest. A soft release involves putting the bear in a den to simulate hibernation, and leaving it to wake up on its own.

Two talented veterinarians, an environmental scientist and several dedicated staff members at the CDFW Wildlife Investigations Lab recently put their heads and their resources together to help heal a pair of adult bears that were badly burned in the Thomas Fire. The bears, which were treated at the same time as a young mountain lion with similar, less severe burn injuries, were released back to the wild last Thursday, after several weeks of intensive – and unusual – care.

CDFW Senior Wildlife Veterinarian Dr. Deana Clifford was acting manager of the Wildlife Investigations Lab in Rancho Cordova when the first bear – an adult female weighing about 200 pounds – was captured inside of a backyard aviary in the Ojai area on December 9. With CDFW Environmental Scientist Christine Thompson coordinating, CDFW Wildlife Officer Jacob Coombs darted the bear and local veterinarian Dr. Duane Tom evaluated its injured paws and overall condition. Thompson then conferred with Clifford, who determined the bear might have a chance at recovery if treated quickly. The bear was put into a trailer for the seven-hour transport to Rancho Cordova, where Clifford was waiting.

By the time the bear arrived, Clifford had already reached out to Dr. Jamie Peyton, Chief of Integrative Medicine at the UC Davis Veterinary Teaching Hospital, for help. Weeks earlier, Peyton, who works mostly on domestic animals, had mentioned to Clifford in passing that she had a particular interest in animal burns, and would be interested in helping wildlife if the chance ever arose.

Peyton created a homemade burn salve for the bears’ paws, and a process for sterilizing tilapia skin. Fish skin, which contains collagen, is often used by doctors in Brazil to bandage human burns. The technique is not yet approved by the Food and Drug Administration for use in the United States, and had not been tried on veterinary patients.

To help keep the tilapia skin in place, Peyton cut pieces to exactly match the size of the bear’s paws and then sutured them over the wounds while the bear was under anesthesia. Additional temporary wrappings, including rice paper and corn husks, were added, with the intention of stretching out the amount of time it would take for the animal to chew down to the fish skin bandage. “We expected the outer wrapping to eventually come off, but we hoped the tilapia would keep steady pressure on the wounds and serve as an artificial skin long enough to speed healing of the wounds underneath,” Peyton said. She also used acupuncture to aid the bear with pain management.

The original plan was for Peyton to come to the lab weekly to check on the bear’s progress. But within just a few weeks, two more burn patients arrived from the Thomas Fire. A second adult female bear, found relatively close to where the first one was found, was brought to the lab by Thompson on December 22. And on December 23, the young mountain lion arrived from Santa Paula. The experimental tilapia treatment was extended to the two newcomers as well.

Of the three animals, the mountain lion’s injuries were the least severe. Because of his young age, he was earmarked for placement in a wildlife rescue facility. The two bears were in much worse condition, with oozing wounds and, in some cases, paw pads that were completely burned off. But because the bears were older and stronger, the veterinarians hoped to return them to the wild if their injuries could be healed.

To complicate matters further, on December 28, during a routine burn treatment, Clifford’s team performed an ultrasound on each bear, and found that the second bear was pregnant. The quest to heal the mother-to-be was now a race against time.

“That was a game changer for us, because we knew it wouldn’t be ideal for her to give birth in confinement,” Clifford said. “We aren’t really set up to have a birth at the lab holding facilities, and we knew there was a high probability that she could reject the cub, due to all the stress she was under. We needed to get her back into the wild as quickly as possible.”

While Clifford and Peyton continued to focus on healing the animals’ injuries, Thompson started scouting out potential release locations. Since both bears needed to be transported back to Southern California, it was decided to try to return them at the same time – albeit not exactly in the same location – in order to make the best use of staff time and resources.

Both bears’ original habitat had been destroyed by fire, so Thompson scouted for two new locations that fit several parameters. The bears needed to be close to their home range, but not within the burn area, and near ample food and water sources. She also wanted to keep them as far away from each other as possible. “A lot of wildlife habitat was destroyed by the fire, and there are already a lot of displaced animals roaming around,” Thompson said. “So there’s a good chance that whatever location we choose is already occupied by other bears, but only they know exactly where that designated territory is. The best we can do is make an educated guess, and place them as deep into wild lands as possible.”

Taking the rapidly changing winter weather reports into careful consideration, the team chose Wednesday, January 17, as the target date to get on the road. That morning, Peyton came to the Wildlife Investigations Lab one last time and both bears were immobilized for a final treatment for their feet. Then the bears were placed into separate transport trailers for the long journey home. Simultaneously, in the Los Padres National Forest, Thompson and Tom spent the day digging dirt and moving logs to create a winter den for each bear.

“At this time of the year, most bears have established dens for the winter, but since these bears won’t have time to create a den, we hope to improve their chances of survival by creating a den for them so they have a home base and shelter right away,” Clifford explained.

The team arrived late Wednesday night, and both staff and bears were hosted overnight by the Ventura County Sheriff’s Department. Early on the morning of January 18, Clifford, Thompson, Coombs, Tom and their team drove the bears deep into the forest for the final leg of their journey. One at a time, each bear was sedated and carefully placed into her den, while the team finished constructing a shelter around the slumbering animal. The bears are about five miles apart, as the crow flies, and each is wearing a satellite collar so CDFW can monitor her movements and survival post-release. Staff also placed trail cameras near each den.

“We’re really hopeful that these novel treatments accelerated the healing for these bears and provided them the best odds of survival,” Clifford said. “It’s especially good to know that we’ve maximized the odds of survival for the cub on the way. We don’t know exactly when it will be born, but hopefully we’ll be able to monitor the movements of the mother via satellite, and that will give us an indication of how things are going.”

For Clifford, the entire experience wasn’t simply about saving the lives of two bears. The bigger picture involves the body of knowledge the experimental treatment provided – both to the Wildlife Investigations Lab team and to the UC Davis Veterinary Teaching Hospital.

“This treatment has the potential to be used successfully on all kind of burn patients, both domestic and wild,” Clifford said. “For us, at the Wildlife Investigations Lab, it’s been an invaluable experience because California’s changing climate means that we’re likely to see more wild animals impacted by catastrophic wildfires. By better understanding what resources are needed to care for injured wildlife and what treatment techniques increase healing speed, we can make the most informed treatment decisions, reduce animals’ time in captivity and provide guidance to other facilities caring for burned animals.”

CDFW photos. For more, please see CDFW’s Flickr photo album: Thomas Fire Bears.

Top photo: The first bear rests in her holding enclosure after her treatment is finished. The outer wrapping on her feet (made of corn husks) will delay her efforts to chew off the tilapia skin bandages underneath.