Science Spotlight

It’s just before dawn in the eastern Sierra Nevada Mountains in Mono County. It’s a cold clear morning, a good day to be out experiencing a still very much wild area of California. California Department of Fish and Wildlife (CDFW) biologist Justin Dellinger and a Wildlife Services houndsman are preparing gear to go out looking for fresh mountain lion tracks in this vast landscape. With the help of a team of highly trained dogs, Dellinger and the tracker are focused on the ultimate goal: Capturing a mountain lion and outfitting it with a GPS collar for research purposes.

This tracking effort in Mono County is part of a larger project to estimate mountain lion population size statewide. It began in the southern Cascades and northern Sierra-Nevada Mountains in 2015, and since then CDFW has solely undertaken or collaborated on similar efforts in the north coast, Modoc plateau and here in the eastern Sierra Nevada Mountains. It’s tough work with long hours; trackers can spend days or even weeks in pursuit of lions. Yet tracking remains the gold standard method of gathering data in the mountain lion research world.

Notably, it takes both biologist and houndsman, each with a unique skill set, to make this team effort work. On this particular day, for example, Dellinger starts the ball rolling when he spots a fresh set of mountain lion tracks made the night before. The mark of the hind heelpad, measuring 52mm across, indicates that it’s a tom (male cat) heading southwest. The long stride suggests he’s traveling in a focused and determined manner – perhaps to secure a meal, locate a mate or confront another male trying to move in on his turf.

Dellinger radios the houndsman, who is astride a mule. The houndsman makes his way to the tracks with dogs in tow, where he assesses a wide variety of information – the time of day, wind speed and direction, topography, etc.

“The mental calculations (of the tracker) are rooted in decades of experience and know-how, but they’re still somewhat of an enigma to me,” Dellinger says. “But then again, houndsman feel likewise about the statistical calculations employed by biologists. It takes both of us, working together, to compile all the information and derive a solid population estimate.”

Over the next several days, the houndsman and the biologist follow the tom over miles of country, with the cat none the wiser about his pursuers. The team eventually catches up to the tom. The dogs masterfully trail him over boulders and around escarpments and tree him in a pinyon pine. The houndsman signals to Dellinger that the tom is treed. Dellinger then works his way into position to dart the animal. Success! Within an hour, the cat is asleep and Dellinger is able to affix a collar.

Yet despite the enormity of the overall effort, the day’s accomplishment is only one small step in the overall plan. Simply put, they’ll get a little rest and then wake up and try to do it all over again tomorrow.

As CDFW’s lead mountain lion biologist, Dellinger understands the need to study and understand Puma concolor only too well. “Lions are the apex predators across much of California, and apex predators can tell scientists a lot about the ecological wellbeing of a given landscape or ecosystem,” he explains. “If mountain lions are decreasing in an area, it’s likely that prey species are decreasing too. If mountain lions are exhibiting health issues, it’s likely that other animals in the ecosystem are experiencing similar issues.”

Because of those grants, this first comprehensive effort to collar lions around the state is now underway. It’s a huge and somewhat daunting task. California’s size and ecological diversity requires a divide-and-conquer approach, meaning that studies can only be conducted in one area at a time. Together, those “slices” of data will add up to a statewide picture. 

Getting the collar on the cat might be the most important part, but all of the data Dellinger collects on this trip will be useful. He’ll be able to compare tracks and remote game camera photos with GPS collar data to derive a minimum count of mountain lions in the area. For now, this is the best way of counting mountain lions in the western United States. In the future, CDFW may grow to rely on data gathering techniques that are more cost- and time-effective than tracking, and use more common skill sets. One possible alternative is developing thanks to the rapid advance of using genetics to monitor wildlife species without having to handle the animals. Scat samples can be collected and analyzed to provide a genetic fingerprint of the animal that deposited them. In theory, if enough lion scat is collected over a large enough area, CDFW can estimate the number of lions in the area.

But scat analysis is still a fairly new way of doing things, and until techniques can be tested, compared and perfected, CDFW will continue to employ the tracking “gold-standard.” The newer methods can be compared to the old, and it’s possible that the newer methods will outperform (i.e., be cheaper and just as reliable) the older methods in some areas but not other areas.

CDFW sees this statewide effort as a first step in monitoring and conserving the elusive, ecologically important mountain lion long-term in California. The project is still in its early stages and will likely continue for another six years or so. Dellinger is enthusiastically looking forward to the work. “It’s really cool because no other state has attempted such a comprehensive population assessment of lions … and  no other western state is as ecologically diverse as California,” he says. “Doing something this comprehensive requires working in a lot of very unique areas. It’s never going to be boring.”

Photos courtesy of Justin Dellinger

These pregnant females will bolster the population of a newly established herd as well as provide an infusion of fresh genetic material to helps ensure their new herd’s health and long-term survival.


Outfitted with an ear tag and two tracking collars, this ram awaits delivery to a new herd where it’s hoped he will infuse the population with fresh genetics


Among the goals of the Sierra Nevada Bighorn Sheep Recovery Plan is the establishment of 12 viable herds across their historic range. CDFW’s capture and relocation efforts over the years have helped establish 14 herds today across 150 miles of their historic range.


These Eastern Sierra bighorn sheep are being prepared for their flight to a new home and new herds.

Seven animals.

Can just seven Sierra Nevada bighorn sheep really make much of an impact on the species’ future?

CDFW scientists believe so, which is why they came away pleased with the results of their annual spring helicopter capture this past March. Limited to three days of work due to strong winds and bad weather, the effort resulted in the capturing, collaring and relocation of seven sheep to new herds high in the Eastern Sierra.

Although the final chapters have yet to be written, the saga surrounding the Sierra Nevada bighorn sheep, one of the rarest large mammals in North America, is shaping up to be a 21st century wildlife success story.

A unique subspecies found only in the Sierra Nevada, historic populations numbered in the thousands. Their steep population decline began in the 1800s as a result of competition from livestock grazing, unregulated hunting and the transmission of disease from domestic sheep. Drought and predation further hammered their numbers, which dwindled to about 100 animals in just three herds by the mid-1990s. State and federal officials declared them endangered in 1999.

Today, less than 20 years removed from those dramatic listings, there are 14 different Sierra Nevada bighorn sheep herds spread across 150 miles of the iconic mountain range. About 600 bighorn sheep are now eking out a living atop the Sierra’s highest peaks. Sierra Nevada bighorn sheep are present once again inside Yosemite National Park and Sequoia National Park after a 100-year absence.

CDFW’s role is itself unique as a state agency tasked with leading the recovery of a federally listed endangered species. Sierra Nevada bighorn sheep are recolonizing their historic range – with a major assist from CDFW’s twice-yearly captures, collaring and strategic “translocations.”

This spring, three males and four pregnant females were captured from two established herds and translocated to two newly reintroduced herds – one along their western range inside Sequoia National Park and another herd in Inyo County at the southernmost extent of their range.

“Whenever we start these new herds, we like to move a minimum of 20 females as well as additional rams over time,” explained Tom Stephenson, a CDFW senior environmental scientist based in Bishop and the leader of the Sierra Nevada Bighorn Sheep Recovery Program. “At that point, we feel the population has enough animals to begin growing at a high enough rate and also has sufficient genetic diversity.”

Before the animals are relocated, a CDFW team records their vital statistics. Ultrasound machines are used to measure body condition and determine pregnancy status. The animals are outfitted with identifying jewelry – color-coded ear tags, VHF and GPS collars that allow biologists to identify them and track their movements for years in some cases.

All the high-tech, intensive monitoring has paid dividends with new appreciation and understanding. Once believed to always migrate to lower elevations in the winter, CDFW scientists have learned that many sheep ride out the Sierra Nevada’s inhospitable winters at 11,000- to 14,000-foot elevations.

“They are really tough,” Stephenson said. “But they’re able to do that because they put on large amounts of body fat in the summer when they’re on quality habitat. They are essentially hibernating standing up in the alpine. They’ve got an environment up there that is wind-scoured so they can find some food. They’re not having to move around much, and they’re relatively free from predators when they’re up in those altitudes in the winter time.”

Not every sheep captured is relocated.

Helicopter crews this spring attempted unsuccessfully to capture rams in the northernmost part of their range, collar them and return them to their same herds. CDFW biologists are keeping close tabs on the Mount Warren Herd near Lee Vining in Mono County in particular and its proximity to domestic sheep grazing on public land. Sierra Nevada bighorn sheep are disease-free and CDFW biologists want to keep them that way.

While populations have met or exceeded some recovery goals, eliminating disease – or the risk of disease – remains a significant benchmark and key to delisting or down-listing the species from endangered status.<

“There are a lot of bighorn sheep populations throughout the West that continue to struggle with disease,” Stephenson said. “So we’ve worked really hard with public land managers as well as private individuals in the Eastern Sierra to try and ensure our bighorn sheep don’t come into contact with domestic sheep.”

CDFW photos courtesy of Andrew Di Salvo. Top Photo: A helicopter crew delivers four bighorn sheep to CDFW's base camp where vital statistics were recorded, blood was taken, and the sheep were outfitted with identifying ear tags and tracking collars.

Camouflaged trap used to capture foxes for the study. CDFW photo by Jennifer Carlson.


Sierra Nevada red fox bounds back to its native habitat after capture and study. CDFW photo by Scientific Aide Corrie McFarland.

The Sierra Nevada red fox has been the subject of intensified study by CDFW over the past decade. As they are notoriously tough to track and even tougher to trap, there are many unanswered questions regarding this elusive animal.

In an effort to better understand this state-listed threatened species, an ongoing research project seeks to capture and affix GPS tracking collars to them. The data collected will help biologists better understand the size and characteristics of the fox’s home range, its denning and resting areas, and its foraging habits.

The species has been outfoxing researchers for some time -- to the point where in the 1980s, it was presumed to have vanished forever from its historically occupied habitat in the Cascade and Sierra Nevada ranges. In March 1993, thanks to the then-emerging technology of infrared trail cameras, US Forest Service employees detected a single red fox in the Lassen National Forest.

That discovery prompted a wider study of foxes and other meso-carnivores in and around Lassen Volcanic National Park. In the late 1990s and early 2000s, Dr. John Perrine of the University of California, Berkeley, captured five individuals, primarily in the park, and placed radio collars on them to study their home range (both summer and winter), food habits and resting sites. Unfortunately, two of the collared individuals died within a year and none of the females reproduced during the course of the study.

Years later, CDFW launched a new study to determine the foxes’ current distribution in northern California and to address potential impacts on the species from activities including recreation and timber harvest. Initial efforts in 2008 used scat-detector dogs to survey portions of Lassen Volcanic National Park and the adjacent Caribou Wilderness. Then, from 2009 to 2011, trail cameras and hair-snaring devices were employed to survey high-elevation habitats in the Cascade Range from Mount Shasta to Lassen Peak. Yet foxes were only detected in the Lassen Peak area.

CDFW biologists have continued to survey for foxes with trail cameras, hair-snaring devices and scat surveys. Scats and photos are often obtained along Lassen Volcanic National Park and Forest Service hiking trails, because, like many other animals, red foxes frequent trails as they move through their territories. Analysis of the DNA contained in the collected scats and hair identified 22 individuals from 2007-2016. Some of these foxes are long-lived – samples collected over time from the same individual indicate that five of those individuals lived at least five and a half years.

CDFW efforts to capture and collar Sierra Nevada red foxes since 2013 were unsuccessful – until early February 2018. The nearly two decade-long dry spell came to an end at last when CDFW captured a Sierra Nevada red fox, a male that weighed about 10 pounds. It was captured in a “log cabin” style trap on National Forest land just outside of Lassen Volcanic National Park, near the town of Mineral. The fox was collared and released at the capture location, and CDFW biologists have been impressed by the distances he has regularly been covering since (five to six miles per day) despite the rough terrain and high elevation.

“Persistence played a large role in our success, because there are many days when we do not have any fox detections,” said CDFW Wildlife Biologist Jennifer Carlson. “We also ramped up our efforts this year by hiring two scientific aids rather than just one, which allowed us to literally double our efforts by putting more traps out across the study area.”

CDFW hopes to capture as many as four more red foxes this year. Scientists are using box traps, cage traps and a “log cabin” style trap that researchers have used in other states to capture both red foxes and wolverines. Capturing foxes is not an easy task given the cold temperatures and snowstorms, but as the Lassen population may only consist of around 20 individuals, it is imperative for the department to learn as much as it can about this stealthy animal.

For more information, please visit the Sierra Nevada red fox page.

Top photo: Senior Environmental Scientist Pete Figura and Senior Wildlife Veterinarian Deana Clifford release a red fox study subject. CDFW photo by Corrie McFarland

It does not take a leap of faith to believe that CDFW scientists have gained the upper hand in bolstering the population of yellow-legged frogs in the High Sierra.

Over the past three decades, Sierra Nevada yellow-legged frogs have become imperiled in California due to the two-pronged impact of introduced (non-native) trout and chytridiomycosis, a disease that is affecting amphibians worldwide.

Past introduction of non-native fish, including rainbow trout and golden trout, to benefit sport fishing in the High Sierra took a heavy toll on the species. High-elevation lakes where these frogs once flourished were largely fishless until fish stocking came into vogue. As the years passed, scientists determined that these introduced fish were depopulating the frogs by competing for food sources (primarily insects) and by predation (trout ate both adult frogs and their tadpoles). Chytridiomycosis, which affects many frog species, also impaired the ability of the Sierra Nevada yellow-legged frog’s skin to exchange vital nutrients, which often leads to death.

As a result, Sierra Nevada yellow-legged frogs are believed to have vanished from approximately 92 percent of their historical habitat, and halting and reversing that decline has become an important goal of CDFW, as well as other state and federal entities.

“This is an animal that only lives in the Sierra Nevada,” said Sarah Mussulman, a CDFW senior environmental scientist. “It is one of our unique California species that lives in high-elevation areas, and as an amphibian it serves as an important link between the terrestrial and aquatic ecosystems. This link is especially critical in the low nutrient, granitic basins of the High Sierra, where frogs and tadpoles consume insects and algae and are themselves consumed by a variety of snakes, birds and mammals.”

CDFW recently completed two projects as part of its ongoing efforts to reverse the population decline of Sierra Nevada yellow-legged frogs.

The efforts took place at two sites: Highland Lake and Clyde Lake, located approximately seven miles apart on the Rubicon River in the Desolation Wilderness area of El Dorado County. The projects were completed with federal grant funds earmarked for the recovery of endangered and threatened species (the species is listed as threatened by the State of California and as endangered by the U.S. Fish and Wildlife Service).

Highland Lake, along with its outlet, an unnamed stream, and two small adjacent ponds, supported a small population of rainbow trout when the project began in 2012. Trout abundance had declined in the absence of stocking in recent years but sufficient natural reproduction occurred in the inlet to Highland Lake to sustain the population. CDFW began using gill nets to remove rainbow trout -- the descendants of fish planted in the lake by CDFW from 1935 to 2000 -- in 2012, in partnership with Eldorado National Forest personnel.

During a frog-monitoring survey at Highland Lake in 2016, approximately 800 adult frogs were observed, as compared to a 2003 survey in which only a few tadpoles were observed. Because the frogs have consistently survived in this area despite the presence of chytridiomycosis, scientists believe they have a good chance at persisting in the area for a long time.

“Highland really had a population explosion over the past five years and can be counted as one of the most successful projects of this type ever undertaken,” Mussulman said.

The project at Clyde Lake was smaller and had somewhat different factors.

Golden trout, which frequently have the same negative impacts on Sierra Nevada yellow-legged frogs as rainbow trout, including predation and competition for food sources, were planted by CDFW at Clyde Lake from 1932 through 2000.

Once stocking was halted, the golden trout proved less resilient then the rainbow trout at Highland Lake, due to habitat factors.

“Clyde Lake sits in a north-facing granite bowl bordered by 1,000-foot cliffs, and no flowing streams enter the lake,” explained Mussulman. “There was no spawning habitat, which is likely why golden trout did not persist there after stocking was halted.”

The stream flowing out of Clyde Lake and four nearby ponds did support a small population of golden trout after plants were halted. The fish in the stream and ponds, which are self-sustaining populations, are precluded from moving from the stream into Clyde Lake by a fabricated dam. In 2013, frogs and a few tadpoles were observed in the stream alongside fish, and CDFW began removing the fish from the stream with gill nets to provide additional habitat for the frogs.

Nine years of monitoring data collected by CDFW scientists indicate that the area’s Sierra Nevada yellow-legged frog population, while small, is slowly increasing. Surveyors observed more than 120 frogs in 2016, compared to a low of six observed in 2005. Moreover, in 2016, for the first time, dozens of tadpoles were observed in the newly fish-free lower reaches of the stream.

“It is great to see these populations recovering,” Mussulman said. “It is a great privilege doing this work that helps keep these frogs on the landscape.”

CDFW photos: Highland Lake in the Desolation Wilderness, and a Sierra Nevada yellow-legged frog

This summer marked the end of an incredible journey for four dozen of California’s designated state freshwater fish, the golden trout, as they returned home after 10 months away. The fish traveled more than 500 miles in tanks and buckets, by hand and by mule, en route to their native waters 9,000 feet up in the Sierra Nevada range.

The journey began last fall after CDFW scientists observed that ongoing drought conditions were severely impacting the rare trout’s mountainous habitat. A decision was made to rescue 52 fish – a representative population that could repopulate the stream and save the species if drought conditions worsened.

Golden trout are one of California’s most iconic trout species. They are native to only two stream systems in the southeast Sierra Nevada – Golden Trout Creek, and the South Fork Kern River in Tulare County. Volcanic Creek, which is home to the rescued fish, connects with Golden Trout Creek during runoff and high-water level years.

The journey began in September 2016, when fisheries biologists made the two-day trek into the mountains to gather the trout. The captured fish were transported to the American River Trout Hatchery near Sacramento, where technicians monitored them, often around the clock. After nine months at the hatchery, the fish were ready to start the long trek back to their home waters. Crew members transferred the fish from the hatchery to a fish tanker truck and hauled them more than seven hours overnight to the trailhead at an elevation of 10,000 feet in the southern Sierra.

The crew met up with a CDFW team that would escort the fish on horseback, 16 miles into the Inyo National Forest. Federal laws forbids motorized vehicles on wilderness land, which left the team no option but to transport the fish by mule train in fish cans.

The operation took tremendous teamwork from multiple divisions in CDFW and the National Forest Service. Ultimately, the CDFW team successfully returned 48 fish to their natural element. Four died in captivity over the winter. CDFW officials consider that a normal mortality rate. Scientists remain optimistic that these iconic fish will continue to thrive and perhaps even be on-track for a brighter future.

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