Science Spotlight

In the heart of California’s Sacramento-San Joaquin River Delta lies a 3,000-acre flooded island called Franks Tract.

Before humans diked and drained Franks Tract to grow potatoes, grains, asparagus and corn, the island was part of a vast freshwater marsh. Breaches in levees flooded Franks Tract in 1937, and farmers never reclaimed the island. Franks Tract today is a nexus point of many delta uses, ranging from duck hunting and bass fishing to fresh water supply for California cities and farms.

But the island is also a hot spot for invasive plants and predatory fishes, as well as a conduit for saltwater intrusion into waterways used to convey freshwater supplies to cities and agriculture in the Delta and other parts of California. For these reasons, Franks Tract is considered a strong candidate for partial restoration.

“Franks Tract is a microcosm of many of the larger problems pervading the inner Delta, said Carl Wilcox, Delta policy advisor to the director of the California Department of Fish and Wildlife. “Some native fishes are in serious decline, improving the quality of available habitat in the Delta and increasing resilience to drought and climate change could support their persistence and recovery.”

Various partners, led by CDFW, are proposing to restore about 1,000 acres of Franks Tract to tidal marsh. The proposed restoration is consistent with the Delta Smelt Resiliency Strategy, state goals for the Franks Tract State Recreation Area, and state water quality control plans for the San Francisco Estuary. The effort also aligns with the multi-agency Delta Conservation Framework and the Central Delta Corridor Partnership.

The proposed restoration could shrink waterweeds, grow fish food, create habitat for Delta smelt and other declining species, and prevent salinity intrusion into the south Delta. It may also improve recreational opportunities for residents and visitors.

Results of hydrodynamics modeling indicate the proposed restoration would provide more fresh water to the central Delta shielding regions upstream from ocean saltwater intrusion. A 2017 UC Davis survey documented year-round use of Franks Tract and surrounding channels by locals, visitors and researchers, and seasonal use by hunters, anglers and boaters. Many survey respondents were concerned about changes in access to the water and effects on the local economy and sport fishing, which is dependent on that access. The survey yielded useful information for the next, more detailed, planning and design round including a locally proposed alternative design.

“We will continue to work with stakeholders to not only address habitat and water quality priorities, but also enhance recreational and sport fishing opportunities,” Wilcox said.

A recently released report, Franks Tract Futures: Exploring Options for Multi-Benefit Restoration and Increased Resilience in the Central Delta Corridor, summarizes the technical studies and stakeholder input that’s been collected relative to the potential restoration of Franks Tract.

If approved for further development, the Franks Tract restoration proposal would enter a second phase of planning, design and environmental review with a target end date of December 2020.

CDFW Photos.

California’s drought emergency was officially declared to be over last year, but its deleterious impact on fish habitat is still being felt in many parts of the state -- especially in arid parts of Southern California. In order to help offset these effects at one site in northern San Diego County, CDFW biologists and other staff recently toiled to create spawning beds for rainbow trout.

The Sweetwater River is a second-order stream located within Cuyamaca Rancho State Park. The underlying rock is granite, which, as it erodes, creates sand that accumulates in the low-gradient portion of the river. Previous surveys in the Sweetwater River revealed a lack of high-quality spawning habitat for the rainbow trout population, which was reduced by 70 to 80 percent during the recent drought.

Seeing an opportunity to restore habitat to this waterway, South Coast Region fisheries biologists came up with a plan to place suitable materials into Sweetwater for the rainbow trout to use for new spawning grounds. Beginning on March 20, CDFW Environmental Scientist Russell Barabe, scientific aids Joseph Stanovich and Ken Sankary and volunteer Mark Berlin worked in the hot sun and dry conditions to rehab the streambed. Using a nearby dry stream channel, the team shoveled hundreds of pounds of rocks and materials through mesh screens to remove fine sediment and sand and clean the rock, called cobbles, to make them ready for placement into Sweetwater River. All the rock had to be moved one bucket at a time and poured into pool tailouts (the downstream end of a pool where the water gradually shallows) to create spawning beds about three feet square for rainbow trout.

Though similar work has been done in northern California – specifically two larger-scale projects in the American and Sacramento rivers, which served as the inspiration for this project – it had never been done in this small a stream before.

This small but important project could increase the spawning success of a drought-reduced population in a stream with easy public access. If successful, this project could be used as a model for future habitat restoration activities in other small trout streams. The fisheries team’s work is an example of how our scientists put the mission of CDFW – to conserve California’s fish and wildlife resources for the use and enjoyment of the public – into action.

CDFW Photos. Top Photo: CDFW Scientists hauling buckets of rocks to create spawning beds for rainbow trout.

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A tiny transponder is placed inside the body cavity of each female salmon. When the fish lay their eggs, the transponders will be expelled, providing scientists with information on when, where and how successful each spawning female is.


After the salmon are tagged, they are returned to a holding pond while the anesthetic wears off.


CDFW scientists electronically identify and perform an ultrasound on each fish in order to assess their pre-spawning condition.


Each salmon in the project received a tiny identity tag that is entered into a database. The computerized system allows biologists to follow individual fish throughout their life cycle.


A team of scientists read, evaluate and record data for each individual salmon.

On Thursday, May 18, fisheries biologists implanted acoustic transponders into 60 endangered adult spring-run Chinook salmon. The transponders will track their movements and help determine spawning success later this season. The salmon will be released to spawn naturally in the San Joaquin River near Friant over the next three months.

Spring-run Chinook have been absent from the river for many decades. Reintroduction is one of multiple strategies biologists are using to reestablish naturally spawning runs of these fish as part of the San Joaquin River Restoration Project. The project – which is jointly coordinated by CDFW, the Bureau of Reclamation, the California Department of Water Resources, the U.S. Fish and Wildlife Service and the National Oceanic and Atmospheric Administration’s National Marine Fisheries Service – is a comprehensive, long-term effort to restore flows to the San Joaquin River from Friant Dam to the confluence of the Merced River and restore a self-sustaining Chinook fishery while reducing or avoiding adverse water supply impacts from restoration flows.

A total of 120 salmon will be implanted and released at two different times. Biologists will track the fish from each release to determine which is most successful. This release strategy provides the hatchery-raised salmon the opportunity to select their own mates, construct redds (a spawning nest in the stream gravel) and spawn naturally.

CDFW photos by Harry Morse