Science Spotlight

The National Oceanic and Atmospheric Administration (NOAA) has recognized a CDFW senior environmental scientist for his role in the historic effort to return endangered winter-run Chinook salmon to the McCloud River for the first time since construction of the Shasta Dam in the 1940s.

Matt Johnson, CDFW’s fisheries supervisor for the winter-run Chinook salmon reintroduction pilot project, was given NOAA’s Partner in the Spotlight Award on Jan. 25, 2024. Johnson oversaw many of the project’s critical components including remote site incubation, trapping of juvenile winter-run and coordinating with project partners including the Winnemem Wintu Tribe.

“It was a surprise and an honor. I threw myself 100 percent into the project so I’m appreciative of the recognition. The project turned into a fascinating and unique opportunity to do something new and historic. It was all unexpected,” Johnson said.

The project launched in summer 2022 in response to drought conditions affecting Shasta reservoir and the lower Sacramento River downstream of Shasta reservoir. Multiple years of severe drought drastically reduced cold-water storage that endangered Chinook needed to live and spawn. CDFW, NOAA, Winnemem Wintu Tribe and the U.S. Fish and Wildlife Service (USFWS) partnered to move winter-run eggs upstream to the McCloud. The river offered favorable habitat including summer cold water conditions required for spawning but was inaccessible to fish because of the dam.

Partners initially relocated about 20,000 fertilized winter-run Chinook salmon eggs from USFWS’ Livingston Stone National Fish Hatchery near Redding. The eggs were transported 80 plus miles to the banks of the McCloud where the species historically spawned prior to construction of the Shasta Dam. The eggs were then placed in specialized incubators. In early August, another 20,000 eggs were transferred to the incubators.

The eggs were released into the river as fry, which were then collected in rotary screw traps and fyke nets, which are devices used that safely capture small salmon. Once collected, the fry were transported downstream of Shasta Dam and successfully released into the Sacramento River so the fry could migrate to the Pacific Ocean.

“Matt and his CDFW colleagues truly went above and beyond to return winter-run Chinook salmon to their historical home in the McCloud River for the first time in over 80 years. It’s clear that this was not just a job for him – he cares deeply about these species, this river, and this ecosystem and he put his heart into bringing them back,” said Brian Ellrott, NOAA’s Central Valley Salmonid Recovery Coordinator.

“Matt is dedicated to ensuring that this historic winter-run salmon pilot project succeeds. He recognized the insight and history the Winnemem Wintu Tribe provided and embraced their contribution to the reintroduction of the McCloud winter-run salmon,” said CDFW Director Charlton H. Bonham. “Matt is humble and passionate about his profession and we’re proud that he is part of our CDFW family.”

Johnson added: “I couldn’t have done any of this without my team. We were a small but dedicated crew and we were fortunate to have support from management, NOAA, the Winnemem Wintu Tribe, UC Davis and the Mount Shasta Fish Hatchery. Seeing an iconic California species returned to its historic habitat after a nearly 80-year absence was pretty incredible.”

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Media Contact:
Peter Tira, CDFW Communications, (916) 215-3858

With less competition from non-native species, native Lahontan cutthroat trout are growing larger in Silver Creek.

Amid the intense, physically demanding native trout restoration work taking place in the fall of 2022 on Silver Creek, Mono County, Nick Buckmaster allowed himself a momentary indulgence.

A senior environmental scientist supervisor with the California Department of Fish and Wildlife (CDFW), Buckmaster paused long enough to imagine himself camped on the banks of Silver Creek within the Humboldt-Toiyabe National Forest, perhaps on vacation, maybe in retirement. It was a warm, summer evening in his mind’s eye, and Buckmaster was casting a dry fly to rising wild and native Lahontan cutthroat trout in the 14- to 16-inch size class.

Such a scenario would have been unthinkable just a couple of years ago. Silver Creek has been closed to fishing of any kind for almost 30 years to protect the remnant population of native trout. Overrun with more aggressive, non-native brook trout despite attempt after attempt to remove them, Silver Creek’s Lahontan cutthroat trout (“LCT” in fisheries parlance) have been clinging to a marginal existence within their home waters.

Today, however, Buckmaster’s dream is closer to reality than it has been in a generation. The Lahontan cutthroat trout recovery work taking place in Silver Creek the last few years represents one of the largest and most ambitious wild and native trout restoration efforts in California history. And nowhere else throughout the Great Basin where Lahontan cutthroat trout were once so abundant is this recovery work happening more quickly, more innovatively and more successfully than in little Silver Creek.

And many eyes are on Silver Creek, a tributary of the West Walker River located about 20 miles northwest of Bridgeport in the hills above the Marine Corps’ Mountain Warfare Training Center. The recovery work there, which will resume in the summer of 2023 as snowmelt allows, is taking place at a moment when federal and state wildlife officials are seeking to accelerate Lahontan cutthroat trout recovery throughout the West. The fish have languished as a listed species under the federal Endangered Species Act for more than 50 years.

Buckmaster and his supervisor, Environmental Program Manager Russell Black from CDFW’s Inland Deserts Region, took on the Silver Creek recovery project in 2020 during the height of the COVID-19 pandemic when social distancing and stay-at-home mandates shut down a lot of other field work. New to the project and passionate about wild trout, the two were either unburdened by decades of past failures at Silver Creek or simply naïve to conventional thinking that Silver Creek and its genetically pure strain of Walker River Basin Lahontan cutthroat trout were a lost cause.

The two supervising fisheries biologists were also on something of a roll having led CDFW’s successful, five-year effort to rescue the federally endangered Owens pupfish, a species so rare it was once declared extinct. That undertaking opened up several square miles of additional pupfish habitat after the removal of non-native, predatory species and helped improve genetic diversity, capturing the imagination of The New York Times in the process.

The same dewatering techniques Buckmaster and Black deployed in the lowlands of the Owens Valley to eliminate non-natives and help pupfish are proving equally effective in the mountains of Mono County to help Lahontan cutthroat trout. Applying those techniques to a small stream environment was a first. For CDFW staff new to the project, training was held last spring at nearby Slinkard Creek (YouTube).

By mid-September, Buckmaster was leading a 10-person crew of fellow fisheries biologists and scientific aids over eight consecutive days of intense field work that involved temporarily lowering flows in portions of Silver Creek (sometimes for a mile or so at a time) to remove the brook trout and relocate the Lahontan cutthroat trout to higher, previously treated reaches upstream that are now brook-trout free. It was Buckmaster’s sixth trip and treatment of Silver Creek of the eight he and his CDFW colleagues would conduct in 2022.

Last year was also a milestone in that CDFW was able to treat all 11 miles of Silver Creek and its tributaries targeted for brook trout removal. The work began at the meadowed, headwaters section and extended 9 miles to rocky, pocket water downstream where a steep waterfall prevents brook trout from moving up into Silver Creek’s higher reaches and best trout habitat.

The goal is not suppression but total removal of the non-native trout within those 11 miles of prime habitat.

“If you leave two brook trout in the system and one happens to be male and the other happens to be female, you’ve lost,” Buckmaster said. “The brook trout will repopulate and take over the creek. And in that case, we might have just as well stayed home and watched football.”

Dewatering Silver Creek begins with installing a temporary sandbag dam. Large, flexible poly pipe not much thicker than a heavy-duty trash bag is attached to the dam, rerouting most of the creek flow more than a mile downstream. Below the dam, the creek is subdivided into quarter-mile sections with barriers installed to block fish movement.

With Silver Creek’s flow significantly reduced and the trout concentrated in the remaining water, electrofishing teams move in, stunning the fish with electrical current and netting those that float toward the surface. The Lahontan cutthroat trout, outnumbered by brook trout 10 to one in Silver Creek’s lower reaches where the September work occurred, are collected and separated from the brook trout. They are measured, recorded and moved upstream of the sandbag dam and released into previously treated sections of the creek. The brook trout are set aside in buckets for later stocking into nearby Kirman Lake for recreational fishing.

Following the initial electrofishing, separate CDFW teams move in with portable pumps to dry up any last remaining pools and puddles that may still be harboring fish. The crews continue to electrofish, move rocks, look under tree roots and probe crevices for fish. A third “clean-up crew” follows behind the pump teams to triple-check the work as water slowly begins to return. The process is repeated over multiple days and over multiple trips.

“No matter how many passes you do with the electrofishing equipment, you keep finding fish until you completely dewater the creek,” Buckmaster said.

While painstaking and physically demanding, dewatering has proven more efficient, less costly and more environmentally friendly than alternative recovery measures used in the past.

CDFW treated Silver Creek with Rotenone in 1994, 1995 and 1996 only to see brook trout return in the early 2000s. Over the past 20 years or so, a variety of government agencies, conservation organizations, fly-fishing clubs and other permitted volunteer groups have also contributed to recovery efforts with periodic brook trout removal. And yet the non-natives persisted.

“Dewatering is an amazing tool,” explained CDFW’s Black. “We’re able to both remove the invasive species and at the same time put that native species right back into the system the same day. That’s having a real positive benefit for LCT while not impacting the creek or the invertebrate community.”

Restoring Silver Creek for Lahontan cutthroat trout has positive ramifications for other native species. As the brook trout population is eliminated, CDFW scientists are encountering more Sierra Nevada yellow-legged frogs. As Silver Creek becomes more hospitable to Lahontan cutthroat trout, it paves the way for the potential reintroduction of other native fish such as speckled dace, mountain whitefish and mountain sucker.

“It’s an all-around win for all native species in what’s a climate-resilient habitat,” Buckmaster said.

Among the end goals, said Black, is to reopen Silver Creek once again to recreational fishing, most likely as part of CDFW’s Heritage and Wild Trout Program, giving anglers a chance to catch wild Lahontan cutthroat trout in their native habitat in a spectacular setting. That prospect may still be a few years away. Black estimates Silver Creek will need two or three additional seasons of dewatering treatments to confirm the complete absence of brook trout. Subsequent monitoring could also be accomplished through eDNA, which can detect brook trout presence simply by testing water samples.

Since 2020, about 15,000 brook trout have been removed from the system, and Lahontan cutthroat trout appear to be thriving in Silver Creek’s upper reaches that are now mostly brook-trout free after multiple dewatering treatments.

“We’re seeing young-of-the year LCT in the headwaters, which we’ve never really seen before, and we’re getting large numbers of adult fish in the system in the 1- to 2-year-old age class,” Black said.

Last fall, some of those adult trout measured 12- to 14-inches in length. It’s the stuff of fly-fishing dreams.

CDFW Photos: Wild trout experts Allison Scott and Gabriel Singer probe for brook trout as a portion of Silver Creek is pumped dry. Signage along Silver Creek proclaims Lahontan cutthroat trout a "California Treasure" and directs anglers to nearby waters that are open to fishing for the native species. Large, flexible poly pipe reroutes most of Silver Creek's water flow around the work zone targeted for brook trout removal. Nick Buckmaster surveys the work taking place at Silver Creek in the fall of 2022.

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Media Contact:
Peter Tira, CDFW Communications, (916) 215-3858

Since being signed into law in 1970, the California Endangered Species Act, or CESA, has proved to be a landmark law in a history of progressive wildlife conservation in California. It has been key in helping to stem the tide of species extinctions, raise public awareness about the plight of wildlife, and underscore the need to balance species conservation with economic development. CDFW is responsible for safeguarding the hundreds of CESA-listed species, and a key part of this mission is supporting and elevating the important research being conducted on these imperiled plants and animals.

The 2021 Special Issue of the California Fish and Wildlife Journal titled “The California Endangered Species Act: Successes and Challenges” contains a comprehensive collection of articles about the research, management and conservation of threatened and endangered species. At 473 pages, this is the largest Journal issue ever published! It includes 16 full research articles, five research notes, two review papers and four essays, altogether covering 25 species. Authors include CDFW staff, academic researchers, non-profit organizations and other conservation entities. Download the entire issue (PDF) or individual articles.

Topics covered in the issue include range expansions, new methods for species identification in the field and lab, reviews of habitat use and spatial occurrence patterns throughout California, results of management actions, benefits of long-term monitoring programs and planning strategies for conservation and recovery actions. The issue starts with a CESA Policy and Regulations section and follows with eight sections organized by taxa. Photos at the beginning of each section showcase California’s amazing biodiversity. For those new to CESA, an overview of the listing process is provided both in a detailed article and a simplified flowchart.

Article highlights include:

Amargosa Niterwort

Plants make up 158 of the 316 species currently listed under CESA. In this issue, Amargosa niterwort (Nitrophila mohavensis) takes the spotlight when authors share the value of a 10-year monitoring program for this alkali wetland plant, which occupies a total area less than 20 km2 in the northern Mojave Desert. Collaborative monitoring has resulted in a better understanding of the species, including phenology and abundance trends. This information could support conservation actions in response to threats such as groundwater alteration and off-highway vehicle impacts. For more details, see the article titled “Status of the Amargosa niterwort (Amaranthaceae) in California and Nevada.”

Bumble Bee Protection

In the article “A conservation conundrum: protecting bumble bees under the California Endangered Species Act,” authors Richard Hatfield and Sarina Jepson of the Xerces Society for Invertebrate Conservation present their view of the history and recent context of listing invertebrates under CESA. The authors argue that population declines driven by factors including climate change, insecticides and habitat loss have led to thirty percent of California’s bumblebee species facing extinction risk. In light of this, the Xerces Society and others have led a recent push to provide formal protections for several species of bumblebee. The article provides the authors’ overview of their 2018 petition to protect four imperiled bumblebee species under CESA and the subsequent legal complications that have unfolded.

California Tiger Salamander

“Use of atypical aquatic breeding habitat by the California Tiger Salamander” provides insight into this endangered species’ ability to reproduce outside of its historically associated habitat. Typically thought to reproduce only in vernal pools, researchers observed California tiger salamanders breeding in cattle stock ponds, intermittent creeks and rain-filled excavated depressions. Further investigation is needed to determine if these atypical breeding sites result in any reproductive success, as some have limited hydroperiods that may not be conducive to California tiger salamander metamorphosis. However, this study provides insight for the potential role of reproductive plasticity in the face of vernal pool habitat loss. For development projects within the range of the California tiger salamander, this study identifies additional habitat features that should be assessed when identifying and addressing potential impacts to this listed species.

We would like to thank the CDFW editorial staff for their hard work on this special issue. We also want to thank and acknowledge the researchers and authors of the articles, whose hard work to understand these imperiled species is helping bring them closer to recovery. The California Fish and Wildlife scientific journal has published high-quality, peer-reviewed science that contributes to the understanding and conservation of California’s wildlife for more than 100 years. We look forward to the continued contributions in the next decade to come.

A tagged Amargosa vole. (National Geographic stock photo)


The “soft release structures” built for the voles were constructed in their natural habitat, giving the captive-bred animals time to adjust to the outdoors. (Photo courtesy of UC Davis School of Veterinary Medicine)
 

Wildlife veterinarians recently hit an important milestone in their collective efforts to conserve a tiny endangered mammal native to the Mojave Desert. The population of Amargosa voles (Microtus californicus scirpensis), restricted to one small town in Inyo County, is now perilously small, due to habitat destruction, climate change and water diversions created to benefit humans. With much of the voles’ natural habitat now decimated, scientists estimate that fewer than 500 currently exist in the wild. (Read the original California Department of Fish and Wildlife Science Spotlight on Amargosa voles).

Co-led by CDFW Wildlife Veterinarian Dr. Deana Clifford and UC Davis Veterinarian Dr. Janet Foley, the Amargosa vole recovery program started in 2012. After the population became nearly extinct in 2014, a captive breeding program was launched at the UC Davis School of Veterinary Medicine as a last-ditch effort to save these tiny creatures, which are a key link in the food chain in their native habitat.

Since the breeding program’s inception, 364 voles have been born and weaned. Several small-scale trial releases have been attempted over the last few years, leading the scientists to identify a clear problem: the animals raised in captivity didn’t necessarily know how to behave in the wild. “The colony animals were a little pampered,” said Foley, referring to the first few trial releases. “They didn’t seem to have the skills to thrive on their own.”

So how to teach a pampered vole to fend for itself? The team members tried several approaches, finally solving an important piece of the puzzle last month. The key was to introduce captive-bred animals to their wild counterparts – and let the former learn from the latter.

The team chose to pair six captive males from the facility at UC Davis with six wild caught females. The voles were introduced to each other for 10 days in temporary indoor cages in Shoshone Village to see which pairs appeared compatible for mating.

Once voles had established pairs, they were moved outdoors. Large dog runs were carefully constructed in their marshland, over the native bulrush that provide shelter and food for the voles. Each run was lined with hardware cloth in order to contain the voles and keep out predators (including coyotes, bobcats, snakes, numerous bird species, bullfrogs, house cats and stray dogs).

For the next 21 days, the new vole pairs continued to get to know each other. Project staff used pit tags – basically telemetry microchips – to monitor their movements and to ensure that they were thriving.

“We used an antenna array around the feeding station, which connects to a computer, so we could watch how they move,” Foley explained. “Most of the time they’re under the bulrush so you can’t see them with the naked eye … but we were amused to see that they’re really not that shy. One male built a tunnel in his natural habitat, but when staff was nearby, he would come out and look right at us before he grabbed food and went back in.”

At the end of 21 days, the kennel doors were opened, allowing the voles to venture out on their own. Foley says that the team was somewhat surprised to see that the pairs generally continued to come and go from the kennels, demonstrating a comfort level with the makeshift shelter. More importantly, at least one of the pairs produced a litter, and several of the other females may be pregnant.

At some point, the team will remove the kennels entirely, at least until the next captive release occurs, likely sometime next spring or summer.

Foley said that she views the July release as a rousing success – not just because the animals are thriving, but because of the body of knowledge the team learned from this experience. “It was really important for us to learn that the colony animals could learn survival skills from their wild counterparts,” she explained. “It was a gamble, and the fact that it worked is so exciting.”

The team will continue to use this technique for the foreseeable future. Ultimately, the goal is to create sustainable populations of Amargosa voles in several different areas. “If there’s a big fire, it could wipe out every marsh in the area,” Foley says. “Our work – and the techniques we are working to perfect -- will help ensure their survival.”

The captive breeding program is one part of a larger joint effort between agencies, universities and nonprofits to save the Amargosa vole. “Together with our partners at the US Fish and Wildlife Service, BLM, UC Davis and UC Berkeley, Shoshone Village and the Amargosa Conservancy, we are conducting habitat restoration, translocations, genetics and health monitoring and community engagement,” Clifford added. “What we’ve learned here not only helps voles, but also helps conserve the other species that rely on these fragile desert marshes.”

Photos Copyright UC Davis School of Veterinary Medicine. Top Photo: One of the recovery team staff members monitoring the vole’s outdoor enclosure during the introductory period. (Photo Courtesy of UC Davis School of Veterinary Medicine)

Media contacts:
Kirsten Macintyre, CDFW Communications, (916) 322-8988
Trina Wood, UC Davis Communications, (530) 752-5257
 

Staff of several wildlife agencies carry light-footed Ridgway’s rails (previously known as light-footed clapper rails) to Batiquitos Lagoon Ecological Reserve.


A light-footed Ridgway’s rail is banded before release into Batiquitos Lagoon Ecological Reserve.

The Ridgway’s rail is a grayish-brown, chicken-sized bird with a long, downward curving bill and a conspicuous whitish rump. Previously known as the clapper rail, the species name was changed in 2014 to honor ornithologist Robert Ridgway. Three subspecies of Ridgway’s rail are resident in California, all of which depend on mudflats or very shallow water (wetland habitat) where there is both forage and taller plant material to provide cover at high tide. They rely on marsh plants such as cordgrass and pickleweed for breeding and feeding.

One subspecies, the light-footed Ridgway’s rail, was once abundant in the Southern California wetlands, but fell to near extinction in the 1980s as their historical habitats were displaced by housing developments. Today, they have a chance to repopulate, buoyed by recent wetland restoration projects by the California Department of Fish and Wildlife (CDFW) and “Team Rail,” a group that has been dedicated to the recovery of this federal- and state-listed marsh bird for more than a decade.

Team Rail is comprised of scientific staff from CDFW, the U.S. Fish and Wildlife Service (USFWS), the U.S. Navy, three zoological breeding centers (SeaWorld San Diego, the San Diego Zoo Safari Park, and the Living Coast Discovery Center) and the Huntington Beach Wetlands Conservancy. Thanks to their efforts, the 2017 rail population reached 514 pairs in the wild. Each rail release is a step closer to achieving the 1985 Light-Footed Clapper Rail Recovery Plan objective of having 800 breeding pairs in California.

Most recently, five light-footed Ridgway’s rails were released into the Batiquitos Lagoon Ecological Reserve in San Diego County. This release consisted of two mated pairs and three offspring produced by one of the pairs. Three of the adults are retired breeders from the zoological breeding program and are part of a rotation plan to reintroduce retired breeders back into the wild. The release of these individuals will contribute genetic diversity to this highly endangered marsh bird population. Rails bred in zoological facilities were released into Batiquitos Lagoon in 2004 and 2005 (eight rails each year), in 2013 (six rails), 2014 (12 rails), and 2015 (seven rails).

“Given that State Ecological Reserves are set aside for the conservation of threatened, rare and endangered species, and rail releases are targeted for wetlands with small subpopulations (fewer than 50 breeding pairs), Batiquitos Lagoon is an ideal location for the release of Ridgway’s rails,” explained CDFW Senior Environmental Scientist (Specialist) Nancy Frost. “For over a decade, CDFW has supported numerous research and monitoring projects for this species, and we are proud to be a partner in their recovery.”

The state-owned Batiquitos Lagoon is managed by CDFW and is one of the few remaining tidal wetlands on the Southern California coast. Located in the city of Carlsbad, it consists of 543 acres with a drainage basin of about 55,000 acres. It is home to several threatened and endangered birds, insects, plants, fish and mammals and is also designated as a State Marine Conservation Area under the Marine Life Protection Act.

Top photo: A light-footed Ridgway’s rail flies away after being released at Batiquitos Lagoon Ecological Reserve in San Diego County.