Science Spotlight

Porcupine1: NRVP participants Greg Moore, Mike Maulhardt, Charles Brown and Ben Smith volunteered to service and maintain porcupine stations at Red Lake Wildlife Area.

Not to put too fine a point on it, but studying California’s porcupines hasn’t traditionally been a high priority for CDFW.

Wildlife research funding is limited, especially for non-game species, and species listed as threatened or endangered are typically given top priority. That means that scientists sometimes need to be creative – and frugal – in their efforts to survey and manage non-listed, non-game species.

Stacy Anderson, a CDFW senior environmental scientist specialist based in Rancho Cordova, recently conducted a pilot project that does just that.

Anderson developed an interest in the North American porcupine (Erethizon dorsatum) in 2017, after acknowledging that anecdotal evidence seems to indicate their numbers are on the decline.

Porcupines have historically inhabited diverse habitats including Humboldt County, along the Sacramento River, in the Coast Ranges, the Klamath Mountains, the southern Cascades, the Modoc Plateau and the Sierra Nevada. But in her conversations with unit biologists and wildlife officers in some of these areas, Anderson took note that many were reporting a substantial decrease in the number of calls from residents whose property – typically wood structures such as decks and outhouses – had been damaged by porcupines in recent decades. Informal surveys of veterinarians across the state also indicated a decline in the number of pet owners seeking quill removal from their pets.

Perhaps most telling, CDFW’s Sierra Nevada monitoring project, which has studied portions of the Sierra for the past nine years, has documented only seven porcupine sightings out of 750 stations surveyed via trail camera.

“We are worried about them because we don’t have a lot of sightings,” Anderson said. They live in low densities and they have only have one baby per year, so they don’t repopulate quickly.”

Recognizing the need to gather more information, Anderson and Evan King, another CDFW environmental scientist, launched a pilot effort last year to improve surveillance of porcupine, with a long-term goal of determining distribution and population numbers.

Anderson and King were inspired by the work of Uldis Roze, a researcher who has long studied porcupines in the Catskills of New York by using wood soaked in salt brine as a porcupine attractant. His research indicates that porcupines show a strong seasonality of salt use, which peaks in April through May and August through September. Because porcupines’ diet of plant matter is generally low in sodium (salt), they seek out other dietary sources of sodium to maintain normal levels in their bodies.

Anderson and King theorized that brined wood could be effective in attracting California porcupines, too. A plan was made to soak stakes made from 2x2s in a sodium brine to monitor activity. In theory, tooth scrapings on the wood could also be identified to species.

“It’s not a full-blown study – it’s just a way to test a plan of action that can maybe be used in a study later,” Anderson explained. “We don’t want to waste valuable resources on untested methodology, so this is a way to find out first if the methodology is going to work. It’s a low-cost, high yield approach.”

Twenty-three stations were set up for the 2017 pilot project, which was conducted from April to October. Members of CDFW’s Natural Resources Volunteer Program, who support departmental operations, supplied much of the labor, and the study costs were kept low. Expenses added up to less than $100, including salt for brining and wood. Trail cameras borrowed from other researchers were utilized to help monitor the stations.

Researchers were pleased to learn that the porcupines took to their efforts with a grain of salt (so to speak). They determined that brined-wood monitoring is more effective than traditional bait or game-trail monitoring, at least in the study area in northern Sierra and along the Sacramento River. Preliminary results indicate that the brined wood appeared to lure porcupines into the area of a camera station -- although most did not approach the wood and fewer still left a distinctive chew mark on the brined wood. But the trail cameras provided clear, useful photographs.

“We still have unanswered questions about this technique that will need to be addressed before we can consider it a success,” Anderson said. “However, our pilot efforts are promising.”

CDFW is seeking additional funding through state wildlife grants and collaborative efforts with other researchers and agencies to gain a better understanding of the North American porcupine’s status. Anderson plans to continue refining the methodology of her study, along with other survey techniques including habitat surveys, feeding signs, tree girdling, scat searches and the use of detection dogs.

Anderson also encourages members of the public to help CDFW’s efforts by reporting detections of live or “roadkill” porcupines.

CDFW Photos. Top Photo: Porcupine photo by CDFW Warden Chad Alexander.

These pregnant females will bolster the population of a newly established herd as well as provide an infusion of fresh genetic material to helps ensure their new herd’s health and long-term survival.


Outfitted with an ear tag and two tracking collars, this ram awaits delivery to a new herd where it’s hoped he will infuse the population with fresh genetics


Among the goals of the Sierra Nevada Bighorn Sheep Recovery Plan is the establishment of 12 viable herds across their historic range. CDFW’s capture and relocation efforts over the years have helped establish 14 herds today across 150 miles of their historic range.


These Eastern Sierra bighorn sheep are being prepared for their flight to a new home and new herds.

Seven animals.

Can just seven Sierra Nevada bighorn sheep really make much of an impact on the species’ future?

CDFW scientists believe so, which is why they came away pleased with the results of their annual spring helicopter capture this past March. Limited to three days of work due to strong winds and bad weather, the effort resulted in the capturing, collaring and relocation of seven sheep to new herds high in the Eastern Sierra.

Although the final chapters have yet to be written, the saga surrounding the Sierra Nevada bighorn sheep, one of the rarest large mammals in North America, is shaping up to be a 21st century wildlife success story.

A unique subspecies found only in the Sierra Nevada, historic populations numbered in the thousands. Their steep population decline began in the 1800s as a result of competition from livestock grazing, unregulated hunting and the transmission of disease from domestic sheep. Drought and predation further hammered their numbers, which dwindled to about 100 animals in just three herds by the mid-1990s. State and federal officials declared them endangered in 1999.

Today, less than 20 years removed from those dramatic listings, there are 14 different Sierra Nevada bighorn sheep herds spread across 150 miles of the iconic mountain range. About 600 bighorn sheep are now eking out a living atop the Sierra’s highest peaks. Sierra Nevada bighorn sheep are present once again inside Yosemite National Park and Sequoia National Park after a 100-year absence.

CDFW’s role is itself unique as a state agency tasked with leading the recovery of a federally listed endangered species. Sierra Nevada bighorn sheep are recolonizing their historic range – with a major assist from CDFW’s twice-yearly captures, collaring and strategic “translocations.”

This spring, three males and four pregnant females were captured from two established herds and translocated to two newly reintroduced herds – one along their western range inside Sequoia National Park and another herd in Inyo County at the southernmost extent of their range.

“Whenever we start these new herds, we like to move a minimum of 20 females as well as additional rams over time,” explained Tom Stephenson, a CDFW senior environmental scientist based in Bishop and the leader of the Sierra Nevada Bighorn Sheep Recovery Program. “At that point, we feel the population has enough animals to begin growing at a high enough rate and also has sufficient genetic diversity.”

Before the animals are relocated, a CDFW team records their vital statistics. Ultrasound machines are used to measure body condition and determine pregnancy status. The animals are outfitted with identifying jewelry – color-coded ear tags, VHF and GPS collars that allow biologists to identify them and track their movements for years in some cases.

All the high-tech, intensive monitoring has paid dividends with new appreciation and understanding. Once believed to always migrate to lower elevations in the winter, CDFW scientists have learned that many sheep ride out the Sierra Nevada’s inhospitable winters at 11,000- to 14,000-foot elevations.

“They are really tough,” Stephenson said. “But they’re able to do that because they put on large amounts of body fat in the summer when they’re on quality habitat. They are essentially hibernating standing up in the alpine. They’ve got an environment up there that is wind-scoured so they can find some food. They’re not having to move around much, and they’re relatively free from predators when they’re up in those altitudes in the winter time.”

Not every sheep captured is relocated.

Helicopter crews this spring attempted unsuccessfully to capture rams in the northernmost part of their range, collar them and return them to their same herds. CDFW biologists are keeping close tabs on the Mount Warren Herd near Lee Vining in Mono County in particular and its proximity to domestic sheep grazing on public land. Sierra Nevada bighorn sheep are disease-free and CDFW biologists want to keep them that way.

While populations have met or exceeded some recovery goals, eliminating disease – or the risk of disease – remains a significant benchmark and key to delisting or down-listing the species from endangered status.<

“There are a lot of bighorn sheep populations throughout the West that continue to struggle with disease,” Stephenson said. “So we’ve worked really hard with public land managers as well as private individuals in the Eastern Sierra to try and ensure our bighorn sheep don’t come into contact with domestic sheep.”

CDFW photos courtesy of Andrew Di Salvo. Top Photo: A helicopter crew delivers four bighorn sheep to CDFW's base camp where vital statistics were recorded, blood was taken, and the sheep were outfitted with identifying ear tags and tracking collars.

A dwindling population of a tiny owl in Southern California has a chance at a comeback, thanks to a collaborative effort by scientists from CDFW, the San Diego Zoo’s Institute for Conservation Research (ICR), Caltrans and the U.S. Fish and Wildlife Service.

The Western burrowing owl (Athene cunicularia hypugaea) is currently listed as a Species of Special Concern, and nongame scientists have long been concerned about their viability and survival. Breeding populations have especially declined in the central and southern coastal areas, due in large part to a combination of habitat loss and eradication of the ground squirrels that dig out the burrows where the owls make their nests. In San Diego County specifically, the once-widespread population has been reduced to a single breeding node in the Otay Mesa region, just north of the Mexico border.

Two groups in particular have been monitoring these owls carefully, in an effort to help. Biologists from Zoo’s ICR have spent seven years assessing owl population status and productivity, including assessing the feasibility and effectiveness of artificial burrows, refining techniques to help the ground squirrels thrive and disperse into new areas and developing a system of identifying potential new locations where the owls might thrive. Much of ICR’s owl research has been conducted at Brown Field, a small municipal airport near the border within the City of San Diego, and on an adjacent property owned by Caltrans.

Meanwhile, about 10 miles from the Brown Field study site, CDFW scientists have spent a decade working to create more suitable burrowing owl habitat at Rancho Jamul Ecological Reserve (RJER). Efforts there included installation of artificial burrows and mowing the tall grass to foster a low-growing grassland suitable for burrowing owls and ground squirrels. Despite their best efforts, CDFW scientists studying the Rancho Jamul site have experienced many years of disappointment -- although wintering owls have shown up every year, none have stayed and attempted to breed on the property. But conditions have been improving over the last four years, thanks to the implementation of a grazing program that reduced dense thatches of old grasses and expanded areas of open ground. As habitat changed at Rancho Jamul, CDFW scientists observed more squirrel burrows, and the conditions seemed just about right for the owls.

This spring, an approved development project at Brown Field began to take shape – and it became evident that the timing for an owl translocation project was ripe at last. Thanks to efforts by Caltrans, which incorporated burrowing owl habitat restoration as part of their mitigation effort for a nearby highway, CDFW staff believed the owl population to be strong enough to support a translocation effort. Also the spring season, just prior to egg-laying, is likely the optimum time to move the animals. After looking at many options, scientists decided to try to move five pairs of breeding owls to RJER in the hopes that they would establish a new population and thrive.

The full conservation team – which included CDFW, the U.S. Fish and Wildlife Service, the City of San Diego, Metro Air Park, Schaefer Ecological Solutions and the San Diego Zoo – was on board and ready to move the owls. In March 2018, the team caught five pairs and moved them to hacking cages at RJER. The owls lived in the cages for about one month to give them time to acclimate to their new surroundings. By the time the cages were removed, each female had laid at least one egg in the artificial burrow chamber.

CDFW Environmental Scientist Dave Mayer has worked on this project for years and is anxious to see efforts at RJER finally pay off. The presence of the eggs, he said, was thrilling to see. “More owls, and at diverse locations, is what it will take to conserve this species in San Diego County. This first step was a long time coming, but I have all my fingers crossed that it’s going to work.”

This successful multi-agency partnership will continue long past the actual translocation day. Scientists banded the owls and fitted some with radio transmitters. ICR staff will monitor the owls themselves, while CDFW staff will monitor the grassland and the grazing program, and perform inspections and repairs of the artificial burrows twice a year. After five years, CDFW will perform regular monitoring of the owls, the habitat and associated grazing practices, and the general status of the ground squirrel population.

Mayer is proud of the work achieved so far in this unusual project. “We built a better mousetrap, with the Zoo’s help,” he says. 

General information about California’s bird species of special concern can be found on the CDFW website, along with the species account (PDF) for the burrowing owl and information about Rancho Jamul Ecological Reserve.

The San Diego Zoo has also issued a news release with more details about the burrowing owl translocation project.

All photos © San Diego Zoo Global, all rights reserved

# # #

The automated recorder model the scientists used. (CDFW photo by Brett Furnas)

Two avian researchers recently completed a groundbreaking study on the effects of climate change, based on the calls of California’s songbirds. By recording the sounds made by eight different songbird species, and tracking the dates they are most vocal and how frequently they sing, the scientists were able to develop a method to measure how the birds are adjusting to climate change.

CDFW Wildlife Ecologist Dr. Brett Furnas and William Jessup University’s Professor Michael McGrann analyzed data from two bird surveys, one done by CDFW and another led by William Jessup University, in the Klamath Mountains and Southern Cascades of northern California. Both studies used automated recorders to monitor bird sounds between 2009 and 2011. The results of their analysis, detailed in a research article entitled Using Occupancy Modeling to Monitor Dates of Peak Vocal Activity for Passerines in California, were published this month in a peer-reviewed, international journal of ornithology, The Condor: Ornithological Applications.

Furnas and McGrann’s study was prompted by the scientists’ concern that climate change could throw bird’s reproduction cycles out of sync with the seasons. Their work, which represents the first comprehensive assessment of songbird occupancy over approximately 15,000 square miles in California, earned high praise from Steve Beissinger, an expert on avian phenology at the University of California, Berkeley.

“Furnas and McGrann provide a textbook example of how to detect differences in the timing of nesting among bird species using information on the peak date of singing derived from surveys and automated recorders,” Beissinger said. “Their results support recent findings of a five-to-twelve day shift forward in the timing of peak singing by California birds in the nearby Sierra Nevada and coastal ranges in response to climate change.”

Because birds’ songs are correlated with their breeding behavior and are easily identifiable to species, the scientists found them to be a useful tool to provide new baseline data for the birds of northern California. Working together, they identified the precise dates of peak vocal activity for eight songbird species: Hutton’s vireo, hermit thrush, dark-eyed junco, Nashville warbler, MacGillivray’s warbler, yellow warbler, western tanager and black-headed grosbeak. In addition to gathering baseline data, Furnas and McGrann developed a method to track advances in the timing of vocal activity in the coming decades.

Male songbirds sing for several reasons -- including to advertise their territory or to find a mate with which to breed. When birds are at their most vocal, they are usually near the height of their breeding season, Furnas explained.

Much like the call of the imperiled “canary in the coal mine,” changes in the frequency or timing of these native birdsongs can serve as barometers of the cumulative impact of climate change.

“When the canary starts singing you know that there is a danger, such as a buildup of dangerous gasses in a mine,” Furnas explained. “When the birds in our study start singing earlier in the season, they are warning us that climate change is starting to disrupt complex ecological cycles that developed slowly over millions of years of evolution.”

One of the most interesting findings of the study so far is a hint in the baseline data that migratory birds may be at greater risk than non-migratory birds. “We found the highest singing activity for migrant birds spanned a shorter number of days than the highest singing activity for non-migratory birds,” Furnas said. “This could be because migratory birds have less flexibility to shift the timing of their breeding cycle. If they are prompted by increasing temperatures to migrate earlier in the year, they may arrive at their breeding grounds to find they don’t have enough insects to eat.

“Migratory birds have to compress a lot of activities into a shorter time period with less margin for error,” Furnas explained. “Think of it like scheduling a short holiday somewhere nice, but when you show up, bad weather cancels out a lot of your itinerary.”

This, in turn, negatively affects the very biodiversity that CDFW is responsible for monitoring.

“If all the species adjusted their ecologies similarly, perhaps that would be OK, but unfortunately, we expect that different insects and birds will react in different ways leading to a mismatch of conditions,” Furnas said.

Both CDFW and William Jessup University plan to continue bird surveys over the long term so that California has the information to support effective management of climate change and other conservation challenges.

Top photo: Singing hermit warbler, one of the species addressed in the study. (CDFW photo by Michael McGrann)

CDFW Environmental Scientist Brian Ehler measures the hind-foot length on a fawn captured near Medicine Lake for a mule deer study.


CDFW Environmental Scientist Brian Ehler measures the hind-foot length on a fawn captured near Medicine Lake for a mule deer study.

Driving up Interstate 5 through Siskiyou County in northern California, one cannot help but take notice of the looming, majestic land mass of Mount Shasta, the largest volcano in the Cascade system.

In this rugged region of the Golden State, mule deer are an iconic species, valued by recreationists and required by wild carnivores who prey upon them for nourishment. Mule deer are considered a “foundation species” because the large landscapes that are necessary for their survival can also be home to a vast array of other wildlife and plant species. But mule deer populations have dramatically declined in recent decades across many western ranges, and in Siskiyou County, this decrease has prompted researchers from CDFW and the University of California, Santa Cruz to partner on a multi-year effort to investigate the population dynamics of this high-profile species.

Since 2015, 51 adult female mule deer and 37 fawns have been captured in the Mount Shasta region. Biological samples, including blood and parasites, have been collected, physical measurements of body condition and age recorded and telemetry collars attached to each subject. Collars on adult deer provide a GPS location every hour and alert researchers when a mortality occurs. The collars also document movement details, including migration routes and the location of critical winter and reproductive ranges. The fawn collars feature location beacons that allow researchers to monitor both general movements and when a mortality has occurred. Once a mortality alert is sent from a collar, a search of the site and an examination of the carcass ensues to determine if the deer died from predation or other causes, such as disease or malnutrition. The collars have timed releases and are set to drop off the animal after 18 months. Researchers can then reuse the collars after retrieving them by following a GPS signal. This high-tech, high-resolution documentation of deer behavior is vital for prioritizing the conservation value of landscapes so they may be better protected in the future.

With the recent arrival of gray wolves to northeastern California, predators are a key focus of the mule deer project. Understanding the influence this large canid will have on natural prey species begins with establishing baselines of how current predators -- including mountain lions, bears, bobcats and coyotes -- are affecting prey in this region. Mountain lions, which rely on deer as the primary component of their diet, are a major focus of this study. Researchers have captured and affixed five adult mountain lions with GPS telemetry collars, allowing them to track and study rates of predation, feeding patterns and diet composition.

The analysis of fecal DNA combined with new statistical techniques is another way to study population density and composition across broad landscapes. DNA analysis allows researchers to determine the sex and identity of an individual deer, which is used to estimate densities and gender ratios. Researchers are collecting fecal samples throughout the mule deer’s summer range, in the hopes of reliably extrapolating estimates of density and sex ratios across the entire region.

This project, which began in 2015, is scheduled to continue into 2019, as researchers strive to gain further insight into the lives of mule deer and predators across this ecologically complex and breathtakingly beautiful region of the state.

California Department of Fish and Wildlife photos.
Top photo: Mount Shasta in winter.