Featured Scientist

Scott Harris participates on fish survey on the Middle Fork Eel River. CDFW Photo by Amanda Ekstrand.

Scott L. Harris is an environmental scientist with CDFW’s Northern Region, based in Mendocino County. Scott is responsible for monitoring and managing salmonid populations in the Eel River and Mendocino coast watersheds as part of the North Central District Salmon and Steelhead Management Project, a multi-faceted effort funded through the Sport Fish Restoration Act (SFRA). His fieldwork includes counting adult salmon and steelhead through spawning ground surveys and ladder counts at the Van Arsdale Fisheries Station (VAFS), counting juvenile salmonids migrating to the ocean and determining resident trout distribution in the Mendocino National Forest. Much of his time is spent at the VAFS fish ladder studying the biological effects of water releases from the Potter Valley Project (PVP). He also consults on fish passage issues, evaluating man-made structures (fish ladders, etc.) at road crossings to determine whether they are damaged, blocked or in need of cleaning, and whether the design is adequate to meet the need.

What or who inspired you to become a scientist?

The “what” is water. I am fascinated with water, salt or fresh. I grew up in Southern California and spent most of my time at the beach. When I was about 10, I was instantly hooked on the ocean when I first put a mask on and saw what was taking place under the waves. At about the same age, I found a local stream and was mesmerized by the number of animals that lived in and around that stream. Then came my love affair with PBS, NOVA, Wild Kingdom, the local library, etc. I’m guessing a lot of folks went through a similar progression.

The “who” probably started with Carl Sagan, Marlin Perkins (and, of course, Jim Fowler, Perkins’ assistant), my friend’s mom (a science teacher) and my dad (an engineer). Today I am surrounded by many colleagues who feed my interest in science and I would bet these folks are inspirational for many others, young and old.

My fascination with water continues today with my job. However, my work with the department requires the understanding of the physical aspects of water, not just the biological aspects. In stream restoration, it is necessary that one understands hydrology and fluvial (movement of sediment in water) processes.

What is a typical day like for you at work?

If there was a typical day, I would probably quit! There are days when I am greeted at my door by hunters that need a bear or deer validated. When a hunter takes a deer or bear, the animal must be reviewed and then some paperwork is completed indicating that the take was legal. In addition, a tooth must be extracted from bears. The tooth is used to determine age and this information is used as a tool in management of our black bear populations. Sometimes I’m asked to pull a bear tooth in the Safeway parking lot or at the gas station. This is not exactly fisheries but I absolutely believe I am part of a team. Typically, if I receive a call before 9 a.m., I know my day will change and that someone needs help. Many days include a wild card. I wouldn’t have it any other way!

I am one of the lucky ones. During the year, I spend 90 percent of my time in the field. So, 90 percent of the year, I leave my office excited and with a smile on my face, ready to learn something new or hopefully teach someone something new.

What is your favorite species to interact with or study?

For those who know me, they know how important herps and birds are to me. I bring that knowledge to many of my colleagues. However, there are two species that I have a special fondness for: The Middle Fork Eel River summer Steelhead and the Pacific Lamprey.

We conduct an annual free dive/snorkel survey on the Middle Fork Eel River that was named the “Death March” 30 or more years ago. This 26-mile, five-day survey is conducted in the Middle Eel/Yolla Bolly Wilderness located in Trinity and Mendocino counties with the intent to enumerate adult summer Steelhead. Dozens of department employees have been on the Death March over the years and I guarantee that they have yet to forget it. This annual survey began in 1966.

In 2009, I took over the activities at the Van Arsdale Fisheries Station located in the upper Eel River. Through our activities there, Pacific Lamprey became a target species for study. I have been collaborating with two people, Damon Goodman with the U.S. Fish and Wildlife Service and Stewart Reid with Western Fishes, both of whom are known for their background and expertise on Pacific Lamprey. We have all learned some amazing things about Pacific Lamprey. There has already been one “white” paper written from this work and I believe there are at least another two in the making.

What aspect of working on monitoring salmonid populations is the most challenging?

The projects that are most challenging are typically those with numerous stakeholders or interested parties. I have been involved with the Willits Bypass for decades and this project has seen multiple agencies and interested parties over time. Keep in mind, the Willits Bypass was started in 1955, so the number of interested parties could be considered myriad. Another project with a high number of interested parties is the PVP. With the Federal Energy Regulatory Commission relicensing effort underway for the PVP, things are getting interesting.

What is the most rewarding project that you have worked on for CDFW?

There are a few projects that come to mind, but the one that I will tell you about is more about how I have volunteered my time as a mentor. About 10 years ago, a neighbor introduced me to her son, Bryan. Bryan needed a science fair project. Before we decided on a project, I thought it would be good to involve Bryan in some of the fieldwork we conduct. So, he ended up getting a taste of salmon spawning ground surveys, juvenile outmigrant trapping, backpack electrofishing – he even participated in the infamous Death March.

The project we decided on was, to say the least, controversial. The title of the project was “Why is there no water in Alder Creek.” And yes, this project had everything to do with the effect of pot growing on aquatic resources. We conducted the fieldwork on weekends due to Bryan’s school schedule and we worked on maps and tables in the evenings. This project led to numerous field visits with department enforcement and Bureau of Land Management enforcement. Things got a little hairy in the field. It also led to a few threats over the phone. The bottom line is, Bryan’s project won first place at the state level and he even got to have lunch with retired Governor Deukmejian. I remain in touch with Bryan to this day, I suppose, as a father figure.

What is the most challenging aspect of your career as an environmental scientist?

For myself, and probably for most of us in the department who conduct monitoring, research and habitat restoration, it is resources. Not having resources (money) to implement more of what we are already doing is maddening. The challenge is to be OK with so little help.

If you had free reign and unlimited funding, what scientific project would you most like to do?

In, at least, our state’s three largest rivers (Sacramento, Klamath and Eel) I would like to see aquatic habitat (rivers, estuaries, lagoons, vernal pools, etc.) restoration of every conceivable type take place, and as quickly as possible. With the implementation of the restoration would come monitoring the effectiveness of the implementation by evaluating the response by plants, animals and the physical environment.

Any advice for people considering careers in science or natural resources?

Certainly, education plays a key role when it comes to our natural resources and science. Education also includes get involved in internships and/or volunteering. I have mentored 15 AmeriCorps members, two of whom went on to get doctorate degrees in fisheries ecology.

Top photo: Scott Harris hoists a bucket during a fish rescue on Feliz Creek. CDFW photo by Derek Acomb

Robert conducts a topographical survey of pool habitat on Big Sur River.


Robert and crew snorkel-survey Coho salmon and steelhead habitat use on South Fork Eel River tributary.

Robert Holmes is an Environmental Program Manager supervisor over the Statewide Water Planning Program in CDFW’s Water Branch. Robert leads efforts in the statewide implementation of the Instream Flow Program, sustainable groundwater management, and water rights activities.

Robert has been with the Water Branch for 10 years, and has worked on instream flow, water quality, and aquatic species and habitat assessments for over 20 years for the State of California. Robert is a freshwater biologist and received a Bachelor of Science from CSU Sacramento in Conservation Biology, and a Master of Science from Humboldt State in Natural Resources where his thesis work was on steelhead trout early life history development.

What inspired you to become a scientist?

I spent my childhood playing outdoors and learned a great appreciation for nature early on – exploring catching and identifying frogs, spiders, turtles, snakes and other critters. Basically, science has always been that pathway of learning about the outdoor world for me. I had lots of questions. What kind of spider is that? What kind of bird? What does it eat? Why is it only here in winter? Fast-forward to today and I’m still asking questions about the natural world, when I’m chasing fish to document habitat use and availability, collecting streamflow to determine gains and losses in a stream reach, or evaluating physical habitat suitability data. There are many rivers and places to explore, many questions to answer about the natural world, and much to learn!

What got you interested in working with water - and fish and wildlife?

Recreation! Growing up near the lower American River, I spent a lot time there with friends, riding bikes, swimming, skim boarding and fishing. In high school we would go snowboarding near Castle Peak, and later, whitewater kayaking and wakeboarding local rivers. On several occasions, when spring conditions were right, we would follow the westward flow of water from the summit to valley by hiking and snowboarding the backcountry of Donner Summit, kayaking a class IV stretch of one of the forks of American River, and then wakeboarding the lower Sacramento River. And that’s all in one weekend! I also like to fly fish. There’s nothing like those cold crisp winter mornings when fishing and it’s so cold your line freezes to the rod and you can barely feel your fingers. It’s worth it when you get the tug on your line, or a steelhead does a tail dance across the top of the water after taking your fly, and you pull them in and see that color! Drifting the Feather River or Yuba River for steelhead is fun, but trout fishing the Eastern Sierra is my favorite.

What brought you to CDFW? What inspires you to stay?

I was awarded a grant in graduate school at Humboldt State funded by the CDFW to develop a spawning and stocking program for coastal cutthroat trout in Humboldt County. At the time, I was also the assistant manager of the HSU Fish Hatchery. I formally came to the CDFW Water Branch in 2008 as the Statewide Instream Flow Coordinator. What inspires me and keeps me here is knowing how important the work is we do in developing instream flow criteria and recommendations for the protection and conservation of our fish and wildlife and their habitats. Our work is a critically important piece of information used by decision makers when balancing water needs and demands and determining water allocation schedules. We also have an awesome professional team who shares a solid work ethic, commitment, and passion for their work and meeting the CDFW mission!

What is a typical day like for you at work?

There is no typical day – really! Every instream flow study we work on and every associated river we step our boots in the water is different and presents its own unique challenges. One thing is for sure – there always needs to be a Plan A, and Plan B, and even a Plan C. Doing field studies brings lots of challenges. We have to plan our activities around storm events, rising and receding flow levels, droughts, access agreements, travel times, species periodicities, equipment limitations and so on. At the end of the day, the priority is always crew safety. We have had to call off several scheduled field days due to potentially unsafe conditions for our field crews presented by heavy storms and high streamflows.

What is special about working in instream flow?

Effective riverine resource stewardship and management is generally achieved by integrating science, policy and public involvement. We conduct instream flow studies to determine instream flow needs for fish and wildlife protection. These studies must be technically defensible, consistent with policies and coordinated and vetted in a transparent process. Therefore, success at achieving flow levels for the protection of fish and wildlife and their habitats is heavily reliant on this three-way interaction between the science, policy and public involvement.

What is special about the field of instream flow is that it takes a diverse, technically trained crew to do our job. For example, we have to draw upon all our scientific disciplines to get the job done – biologists, ecologists, hydrologists, water management scientists, engineering geologists, hydraulic engineers and others. I also get the privilege of working on external projects with some of the best and most well respected scientists in the field of instream flows, aquatic ecology and fisheries. Currently we are participating in an effort with hydrologists from UC Davis and other scientists to develop a statewide framework for assessing ecosystem and environmental flow criteria. This effort is really exciting as it has the potential to be very useful for several of our CDFW headquarters and regional program functions that use instream flow criteria for doing their jobs.

What is most challenging aspect of your job?

A commonly heard complaint of instream flow is that it is an issue of “water for fish versus people” and that instream flow practitioners advocate natural conditions in rivers at the expense of other water users. This idea is popular, but misleading, because all water uses – for recreation, for municipal supply, for industry, for fish and wildlife – are ultimately for the benefit and enjoyment of people in one way or another. In the long run, reserving water for instream flow is about the use and enjoyment of the river’s natural resources by future generations. Since these future users of water are not available to express their needs or desires, fish are often used as an indicator of healthy river conditions. So preserving instream flows (and fish) today actually preserves water management options for future generations.

What is the most rewarding project that you’ve worked on for CDFW?

Every project is rewarding in different ways. Probably most rewarding from a big picture view is knowing how important the work we do is in the decision making and balancing processes by the State Water Board. It was actually very rewarding to publish a recent study of steelhead habitat selection and availability from the Big Sur River, which was initially approved for publication in North American Journal of Fisheries Management, in our very own Fish and Game Journal’s 100th year “Special Fisheries Issue” (PDF). There was only one chance to publish in this special issue – the next one is another century away! Our team has published multiple papers in several of the top scientific international peer review journals – but being a part of the 100th year of publication special fisheries issue was cool!

If you had free reign and unlimited funding, what scientific project would you most like to do?

Understanding the relationship between surface water and groundwater on streams and rivers is really important as it has the potential to affect both the quantity and quality fish and wildlife habitats. Generally speaking, surface water and groundwater systems are connected in most landscapes and streams interact with groundwater in three basic ways: streams gain water from inflow of groundwater through the streambed, streams lose water by outflow through the streambed, or they do both depending upon the location along the stream. Groundwater seepage is vitally important to the hydrologic cycles and for fish and wildlife in California because it is responsible for keeping water in rivers during times of no rainfall (i.e., base flow conditions). I would really like to see more research into understanding these surface water and groundwater relationships on a regional and statewide scale and how this interaction can affect the base flows for fish and wildlife.

What is the best thing about being a fish and wildlife scientist?

The best thing about being a scientist is turning field data into information for decision making processes. Putting on a cold (and still wet) wetsuit in the morning and hopping into ice cold frigid water to survey salmonid habitat use would not be considered fun by many. But the best part is actually being in the water with the fish and observing and recording their behavior in their habitat – specifically observing the microhabitats they select to occupy (or not) and feed or hold, and how they interact among themselves and with other species as they grow and compete for resources – and as flow levels change. After collecting data it is the scientists’ responsibility of turning that observation data into information that natural resource managers, the public, and decision makers can use. Honestly, seeing this whole scientific process through – identifying study questions, study design and planning, implementation and then reporting – is the best part of being a fish and wildlife scientist!

Do you have any advice for people considering careers in science or natural resources?

Get your feet wet! Do internships while in college and try different jobs in the field of your interest. First, you will be able to figure out what is right for you, and maybe what is not. Second, these jobs, whether volunteer or paid, and the associated people you meet and interact with early in your education and career will likely be important as you develop professional relationships and move into a career down the road. And most of all – have fun! Science is important, challenging, rewarding and fun.

CDFW photos. Top photo: Robert conducting snorkel survey of steelhead habitat use on Big Sur River.

Alisa Ellsworth holds a newly-collared bobcat for the Eastern Sierra Bobcat Project.


Alisa Ellsworth and crew working on Fish Slough Ecological Reserve restoration project.

CDFW Senior Environmental Scientist Alisa Ellsworth supervises the Inland Desert Region’s Northern Lands Program. Based out of the Bishop office, Alisa oversees 10 employees who perform a wide variety of activities including land acquisition planning, coordinating mitigation for incidental take, and managing over 120,000 acres of state ecological reserves and wildlife areas in Inyo, Mono and San Bernardino counties.

A Central Valley native, Alisa grew up in Visalia. She attended both undergraduate and graduate school at Fresno State, where she completed a bachelor’s degree in botany in 1993 and a master’s degree in biology in 1995. Her thesis focused on vernal pool ecology in Madera County.

What inspired you to become a biologist?

My interest in science first started in high school when I had to do an insect and plant collection for my biology class. I really enjoyed learning how to identify things in nature. When I started college, I was naturally drawn to biology courses and my path was set. I met a group of people that liked to go out botanizing and birding on the weekends and a whole new world opened up for me.

My first wildlife job was in 1992 with Pacific Southwest Research Station, estimating the density of spotted owls in Sequoia National Park. This is where I learned how to hike at night using a compass and topographic map, as there weren’t GPS units back in those days. The work also involved gathering vital rate data (reproduction and mortality) as well as characterizing diets from regurgitated pellets. In 1993, I spent an amazing summer working for the US Forest Service. I hiked all over the Sierra National Forest, mapping vegetation types and looking for rare plants.

How did you come to work for CDFW?

I worked as a scientific aide for the Habitat Conservation group in the Central Region for a year and a half when I was in college. After I graduated, I began working as a private consultant until 1996 conducting rare plant surveys, wetland delineations and revegetation projects. Around that time, I caught the travel bug and applied for a research assistant position focused on field studies of the guanaco, a South American wild camelid related to the llama. This took me to Torres Del Paine National Park in the Patagonia region of southern Chile, where I worked on guanaco reproductive strategies, spacing strategies and movement. We radio collared young guanacos (called chulengos) and monitored for survival and cause-specific mortality. This involved watching a mother give birth to her baby and then soon after running in and grabbing the baby and quickly putting a radio collar on it. Most of the mothers were pretty mild mannered, but one tried stomping on us and spit all over us, which was quite smelly!

Afterward, I joined the Peace Corps and stayed in Ecuador until 1999, working on environmental education projects in schools. When I returned to the United States, I worked briefly as a consultant again, and then took an associate biologist position with Caltrans in Fresno. When a position opened up in CDFW’s Bishop office, in the streambed alteration agreement program, I jumped at it. I was hired in 2001 and have never wanted to leave Bishop since.

Over my career with CDFW, I have managed the X9B and X9C deer zones, the Owens Valley tule elk zones and the White Mountain bighorn sheep hunt zone. I have collected and analyzed wildlife population data for upland game birds, mule deer, tule elk and Nelson bighorn sheep. I’ve provided harvest recommendations and direction for population management of those game animals. Since 2008, I’ve been with the Lands program, working on acquisition projects, writing grants and working with the Wildlife Conservation Board and other non-governmental organizations on projects of shared interest.

We sometimes say that the Eastern Sierra is “the most beautiful part of California you’ve never seen.” What is unique about this ecosphere?

The Eastern Sierra is comprised of mostly public land with very little development compared to many other areas around California. This allows for intact wildlife populations to exist in vast expanses of native habitat. For example, the federally endangered Sierra Nevada bighorn sheep can be found in the high alpine environment in the summer months. They then move downslope in the winter to take advantage of available food not buried under snow. More than 600 bighorn in 13 occupied herd units can now be found in the Sierras, compared to 1995 when there were only 105 left after being devastated from diseases transmitted from competing domestic livestock in the high alpine meadows.

The sheer beauty of the tall mountains and the abundance of wildlife make it a truly special place. I enjoy hearing the tule elk bugling in the fall evenings near the Owens River. If you really want a treat, you can wake up before the sun rises to go observe the greater sage grouse congregate on their leks (meadows or barren areas with little cover) during the spring breeding season. The males put on quite a display in hopes of attracting a female by puffing out their chest, inflating air sacs and making unique sounds that I equate to drops of water.

What kinds of projects are conducted on the reserves and wildlife areas you manage?

Our activities are quite diverse, including managing water rights and grazing, controlling invasive species and performing various wildlife surveys. I serve as the lead for the Eastern Sierra bobcat study, which was initiated in 2014-2015 as part of a three-year project to assess current populations in Inyo and Mono counties. Specific data collected during the study include bobcat population size, density and age structure, as well as home range size, habitat selection, prey base and reproduction.

I also am also the lead for the low-elevation mesocarnivore survey project. This involves the use of remote cameras to capture detailed images of wildlife species such as bobcat, coyote and gray fox. The surveys help us estimate the percent of the study area that a species of interest occurs by placing one camera within a 10.4 Km cell and surveying 100 cells over multiple weeks. The data collected provides occupancy of the species surveyed. Capture-mark-recapture surveys can be done using this method with species such as bobcats that can be identified because of their unique coat patterns.

Inyo and Mono counties have been divided into eight study areas using geographical boundaries that the mesocarnivore surveys will be rotated through. Initially, these surveys will provide occupancy and abundance of individual species within each study area. Over time, data collected from the surveys can be useful to identify population trends.

What has been the most satisfying part of your CDFW career?

I really enjoy working with outstanding people who are focused on managing and conserving the state’s most important places and wildlife. I’m particularly proud of the conservation work that’s been conducted for the benefit of the Round Valley deer herd. We purchased several important properties within its winter range in Rovana and Swall Meadows, with the goal of protecting an intact migration corridor for them to move up and down in elevation to and from their winter and summer ranges.

What projects would you undertake if you had unlimited money and resources?

I am passionate about conserving natural areas for the perpetuation of healthy ecosystems and the wildlife populations they support. California is an incredibly biologically diverse state and these places are truly unique. By protecting them, we will allow them to be enjoyed generations to come. My most recent focus has been working to conserve the greater sage grouse through land acquisition and conservation easements. Funding all of the proposed actions in the Bi-State Action Plan for Greater sage grouse would be a dream come true.

CDFW photos.
Top photo: Alisa Ellsworth works a Sierra Nevada bighorn sheep capture.